View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10123_low_4 (Length: 390)
Name: NF10123_low_4
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 23258910 - 23258564
Alignment:
| Q |
22 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaatcttcctttggttggtgaggttggtttaggagctgaccttgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
23258910 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaaccttcctttggttggtgaggttggtttaggagctgatcttgt |
23258811 |
T |
|
| Q |
122 |
gaggattgatggaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgtt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
23258810 |
gaggattgatggaagatccatgtgctctcctggattctcttgcgattctgctttgcaggttacttacattgttaggggaagcggccgtgttcaggttgtt |
23258711 |
T |
|
| Q |
222 |
ggtgttgatggtaagagagttttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23258710 |
ggtgttgatggtaagagagtcttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
23258611 |
T |
|
| Q |
322 |
gaatggagtggttctctatcatcactacccctaagtgagtttttctt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23258610 |
gaatggagtggttctctatcatcactacccctaagtaagtttttctt |
23258564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 23276788 - 23276442
Alignment:
| Q |
22 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaatcttcctttggttggtgaggttggtttaggagctgaccttgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
23276788 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaaccttcctttggttggtgaggttggtttaggagctgatcttgt |
23276689 |
T |
|
| Q |
122 |
gaggattgatggaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgtt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23276688 |
gaggattgatggaagatccatgtgctctcctggattctcttgcgattctgctttgcaggttacttacattgttaggggaagcggccgtgttcaggttgtt |
23276589 |
T |
|
| Q |
222 |
ggtgttgatggtaagagagttttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23276588 |
ggtgttgatggtaagagagtcttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
23276489 |
T |
|
| Q |
322 |
gaatggagtggttctctatcatcactacccctaagtgagtttttctt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23276488 |
gaatggagtggttctctatcatcactacccctaagtaagtttttctt |
23276442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 27543313 - 27542967
Alignment:
| Q |
22 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaatcttcctttggttggtgaggttggtttaggagctgaccttgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543313 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaaccttcctttggttggtgaggttggtttaggagctgaccttgt |
27543214 |
T |
|
| Q |
122 |
gaggattgatggaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgtt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27543213 |
gaggattgatggaagatccatgtgctctcctggtttctcttgtgattctgctttacaggttacttacattgttagagggagcggccgtgttcaggttgtt |
27543114 |
T |
|
| Q |
222 |
ggtgttgatggtaagagagttttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||||| |
|
|
| T |
27543113 |
ggtgttgatggtaagagagttttggagacaactttgaagtccggagatttgttcattgttccaaggttcttcgtcgtctcgaagattgctgacaatgatg |
27543014 |
T |
|
| Q |
322 |
gaatggagtggttctctatcatcactacccctaagtgagtttttctt |
368 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
27543013 |
gaatggagtggttttctatcatcaccacccctaagtgagtttttctt |
27542967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 11136360 - 11136706
Alignment:
| Q |
22 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaatcttcctttggttggtgaggttggtttaggagctgaccttgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11136360 |
caccattggatgttgatattaagaatggtggaagggttgttgtattgaacactaagaaccttcctttggtcggtgaggttggtttaggagccgaccttgt |
11136459 |
T |
|
| Q |
122 |
gaggattgatggaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgtt |
221 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
11136460 |
gaggatcgatggaagatccatgtgctcgcccggattctcttgtgattctgctttacaggttacttacattgttaggggaagtggccgtgttcaagttgtt |
11136559 |
T |
|
| Q |
222 |
ggtgttgatggtaagagagttttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
11136560 |
ggtgttgatggtaagagagttttggagacaactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcgaaaattgctgacaatgatg |
11136659 |
T |
|
| Q |
322 |
gaatggagtggttctctatcatcactacccctaagtgagtttttctt |
368 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11136660 |
gaatggagtggttttctatcatcactacccctaagtgagtttttctt |
11136706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 8986397 - 8986051
Alignment:
| Q |
22 |
caccattggatgttgatattaagaatggtggaagggttgttgtcttgaacaccaagaatcttcctttggttggtgaggttggtttaggagctgaccttgt |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
8986397 |
caccattggatgttgatattaaaaatggtggaagggttgttgtcctgaacaccaagaaccttcctttggttggtgaggttggtttaggagctgatctaat |
8986298 |
T |
|
| Q |
122 |
gaggattgatggaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgtt |
221 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8986297 |
gaggattgattgaagatccatgtgctctcctggattctcttgtgattctgctttgcaggttacttacattgttagggggagcggacgagttcaggttgtt |
8986198 |
T |
|
| Q |
222 |
ggtgttgatggtaagagagttttggagaccactttgaaggctggagatttgttcattgtgccgaggtttttcgttgtctcaaagattgctaacaatgatg |
321 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
8986197 |
ggtgttgatggtaagagagtcttggagacaactttgaaggctggagatttgttcattatgccgaggttttttgttgtctcaaagattgctgaaaatgatg |
8986098 |
T |
|
| Q |
322 |
gaatggagtggttctctatcatcactacccctaagtgagtttttctt |
368 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
8986097 |
gaatggagtggttttctataatcactacccctaagtgagtttttctt |
8986051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 33125044 - 33124983
Alignment:
| Q |
159 |
tcttgtgattctgctttgcaggttacttacattgttagggggagcggccgtgttcaggttgt |
220 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
33125044 |
tcttgtgattctgctttacaagttacctacattgttagagggagcggtcgtgttcaggttgt |
33124983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 33125095 - 33125050
Alignment:
| Q |
34 |
ttgatattaagaatggtggaagggttgttgtcttgaacaccaagaa |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
33125095 |
ttgatattaagaatggtggaagggttgttcttttgaacacaaagaa |
33125050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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