View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_5 (Length: 385)
Name: NF10123_low_5
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 33633684 - 33633340
Alignment:
| Q |
24 |
ctgcgtgcttaatttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaannnnnnnnncaatttttaatatgtattt |
123 |
Q |
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| T |
33633684 |
ctgcgtgcttaatttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaatttttttttcaatttttaatatgtattt |
33633585 |
T |
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| Q |
124 |
ttaacataaattagttctggatgtacatttcatattttgatgtgatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaa |
223 |
Q |
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| T |
33633584 |
ttaacataaattagttctgggtgtacatttcatattttgatgtaatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaa |
33633485 |
T |
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| Q |
224 |
cagtcaatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatg |
323 |
Q |
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| T |
33633484 |
cagtcaatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgaaacaatcgggattgtggactgcaattttgaactaaaatg |
33633385 |
T |
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| Q |
324 |
tgaggactgatttaactgaagaagttctattgtgttggagcaact |
368 |
Q |
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| T |
33633384 |
tgaggactgatttaactgaagaagttctattgtgttggagcaact |
33633340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 229 - 368
Target Start/End: Original strand, 29192467 - 29192606
Alignment:
| Q |
229 |
aatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgagg |
328 |
Q |
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| T |
29192467 |
aatttggccgtaattgcaattacattaccgttgagggacttctaaaacctagttgcaacaattgggattgtagactgcaattttgaactaaaatgttagg |
29192566 |
T |
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| Q |
329 |
actgatttaactgaagaagttctattgtgttggagcaact |
368 |
Q |
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| T |
29192567 |
actgatttaactgaaggagttctattgcgttcgagcaact |
29192606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 29192383 - 29192441
Alignment:
| Q |
37 |
ttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaa |
95 |
Q |
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| T |
29192383 |
ttgttaattgatatattcaaagtgatttacaccgattaaataatcagattagttcgtaa |
29192441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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