View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_9 (Length: 342)
Name: NF10123_low_9
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 4302284 - 4301972
Alignment:
| Q |
18 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtccatatggtgatatct |
117 |
Q |
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| T |
4302284 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctctta--ggaatgtgtccatatggtgatatct |
4302187 |
T |
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| Q |
118 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagtt |
217 |
Q |
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| T |
4302186 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagtt |
4302087 |
T |
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| Q |
218 |
gcaaacgaactcacttgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaa |
317 |
Q |
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| T |
4302086 |
gcaaacgaactcacttgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaa |
4301987 |
T |
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| Q |
318 |
aacacatttcctttg |
332 |
Q |
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| T |
4301986 |
aacacatttcctttg |
4301972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 49100456 - 49100586
Alignment:
| Q |
102 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
201 |
Q |
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| T |
49100456 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcag |
49100555 |
T |
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| Q |
202 |
cctacctataatagttgcaaacgaactcact |
232 |
Q |
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| T |
49100556 |
cctacctataaacgttgcaaacaaactcact |
49100586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 49112250 - 49112401
Alignment:
| Q |
102 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
201 |
Q |
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| T |
49112250 |
ccatatggtaatatctgttattggtttgcttcaaacggtttaggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaa |
49112349 |
T |
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| Q |
202 |
cctacctataatagttgcaaacgaactcacttgccgctgggtaatcaatgga |
253 |
Q |
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| T |
49112350 |
tctacctataatagttgcaaatgaactcacttggcgctgagtgctcaatgga |
49112401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 49112454 - 49112512
Alignment:
| Q |
274 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
332 |
Q |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttg |
49112512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 49100660 - 49100718
Alignment:
| Q |
274 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
332 |
Q |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttg |
49100718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 49100251 - 49100306
Alignment:
| Q |
46 |
ttgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtcc |
103 |
Q |
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| T |
49100251 |
ttgaagccttttcagccaagactactgcacctagaatttctc--ctaggaatgtgtcc |
49100306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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