View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_10 (Length: 331)

Name: NF10124_10
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_10
NF10124_10
[»] chr5 (4 HSPs)
chr5 (13-331)||(15156333-15156651)
chr5 (18-96)||(37060339-37060418)
chr5 (18-73)||(37018816-37018871)
chr5 (17-97)||(3745280-3745361)
[»] chr3 (1 HSPs)
chr3 (19-115)||(621996-622093)
[»] chr2 (1 HSPs)
chr2 (19-108)||(36639053-36639143)
[»] chr6 (1 HSPs)
chr6 (18-110)||(32312815-32312908)
[»] chr1 (3 HSPs)
chr1 (18-110)||(43292730-43292823)
chr1 (34-115)||(35998116-35998198)
chr1 (18-93)||(7451459-7451535)
[»] scaffold0095 (1 HSPs)
scaffold0095 (13-115)||(37845-37948)
[»] chr8 (2 HSPs)
chr8 (13-115)||(39396853-39396956)
chr8 (20-109)||(41146144-41146234)
[»] chr4 (1 HSPs)
chr4 (17-109)||(41922001-41922094)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 15156651 - 15156333
Alignment:
Q  13 atactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaagtagtatttggagtttctaaaaatcacggcaaaaactc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  15156651 atactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaagtagtatttcgagtttctagaaatcacagcaaaaactc 15156552  T
Q  113 atctgcattcgataccaataatcatgcatgcagattctatttccatttcttcctcattgtaaagttttaaatcacaatattgaaaaggagaaagtgtggt 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156551 atctgcgttcgataccaataatcatgcatgcagattctatttccatttcttcctcattgtaaagttttaaatcacaatattgaaaaggagaaagtgtggt 15156452  T
Q  213 agtgactattcatgaggttcctaataggctaataccattattggcccatcaaaagcaaaataagtatacaagcccaaacttttttcaaagcnnnnnnnag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  15156451 agtgactattcatgaggttcctaataggctaataccattattggcccatcaaaagcaaaataagtatacaagcccaaacttttttcaaagctttttttag 15156352  T
Q  313 attaaagtttaggtgttgg 331  Q
    |||||||||||||||||||    
T  15156351 attaaagtttaggtgttgg 15156333  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 37060418 - 37060339
Alignment:
Q  18 gcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaa 96  Q
    ||||||||||||| ||||| ||||||||| || ||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  37060418 gcgtttgcaaaacagagttggatggaaatcacggcaaaaaatcatgttaatgtagaagttagtatttggagcttctaaaa 37060339  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37018816 - 37018871
Alignment:
Q  18 gcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtaga 73  Q
    ||||||||||| | |||||||||||||||||| |||||||| || |||| ||||||    
T  37018816 gcgtttgcaaagcagagtttgatggaaattacggcaaaaaaccacgttagcgtaga 37018871  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 3745361 - 3745280
Alignment:
Q  17 tgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaagt-agtatttggagtttctaaaaa 97  Q
    ||||||||||||||  ||| |||| ||||| ||  ||||| |||| |||| |||| |||| |||||||||||||||||||||    
T  3745361 tgcgtttgcaaaacaaagtatgatagaaatcacgacaaaacatcacgttagcgtataagttagtatttggagtttctaaaaa 3745280  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 621996 - 622093
Alignment:
Q  19 cgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaactcatc 115  Q
    |||||||||||  |||||||||| |||| ||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||||| ||||    
T  621996 cgtttgcaaaatagagtttgatgaaaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaatcacggcaaaaacgcatc 622093  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 36639143 - 36639053
Alignment:
Q  19 cgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaa 108  Q
    |||||||||||| |||||||||| |||| ||| |||||||| |||||| |||||||| || |||||||| ||||||||| ||||| |||||    
T  36639143 cgtttgcaaaacggagtttgatgaaaatcacaacaaaaaattatgttatcgtagaagttaatatttggaatttctaaaagtcacgacaaaa 36639053  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 32312815 - 32312908
Alignment:
Q  18 gcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaac 110  Q
    ||||||||||||| || |||||||||||| || |||||||| ||||||| |||||||| |||||| ||||| || |  ||||||||||||||||    
T  32312815 gcgtttgcaaaacggactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctggagcttttggaaatcacggcaaaaac 32312908  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 43292730 - 43292823
Alignment:
Q  18 gcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaac 110  Q
    |||||||  |||| ||||||||||||||| || | |||||| |||||||||||| ||| |||||||||||| |||| |||||||||| ||||||    
T  43292730 gcgtttgtcaaacagagtttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatcacggtaaaaac 43292823  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 35998116 - 35998198
Alignment:
Q  34 gtttgatggaaattacagcaaaaaatcatgttaacgtagaagt-agtatttggagtttctaaaaatcacggcaaaaactcatc 115  Q
    ||||||||||||| ||  |||||||| | |||| || |||||| ||||||||||| |||||||||||||| ||||||| ||||    
T  35998116 gtttgatggaaatcacgacaaaaaattacgttagcgaagaagttagtatttggagcttctaaaaatcacgacaaaaacgcatc 35998198  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 7451459 - 7451535
Alignment:
Q  18 gcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttcta 93  Q
    ||||||||||||  |||||||||| |||||||  |||||||||| |||||  || ||| |||||||||||| |||||    
T  7451459 gcgtttgcaaaatggagtttgatgaaaattacgacaaaaaatcacgttaatataaaagttagtatttggagcttcta 7451535  T

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Target: scaffold0095 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 37845 - 37948
Alignment:
Q  13 atactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaact 111  Q
    |||| ||||||||||||| | ||| ||||||||| || |||||||| || |||| |  ||||| |||||||||||| |||| |||||||||||||||||     
T  37845 atacagcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaacg 37944  T
Q  112 catc 115  Q
    ||||    
T  37945 catc 37948  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 39396956 - 39396853
Alignment:
Q  13 atactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaact 111  Q
    |||| ||||||||||||| | ||| ||||||||| || |||||||| || |||| |  ||||| |||||||||||| |||| |||||||||||||||||     
T  39396956 atacagcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaacg 39396857  T
Q  112 catc 115  Q
    ||||    
T  39396856 catc 39396853  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 41146144 - 41146234
Alignment:
Q  20 gtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtag-aagtagtatttggagtttctaaaaatcacggcaaaaa 109  Q
    ||||||||||| ||||||||| ||||| || |||||||| || |||||||||| || |||||||||||| || | | ||||||||||||||    
T  41146144 gtttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggcaaaaa 41146234  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 41922094 - 41922001
Alignment:
Q  17 tgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag-tagtatttggagtttctaaaaatcacggcaaaaa 109  Q
    |||||||| ||||| ||||||||| ||||| || |||||||| || |||||| |||||| |||||||||||| || | | ||||||||||||||    
T  41922094 tgcgtttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaatcacggcaaaaa 41922001  T

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