View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_11 (Length: 329)
Name: NF10124_11
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_11 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 130 - 314
Target Start/End: Original strand, 39777385 - 39777569
Alignment:
| Q |
130 |
tattgaattatttttcataactctaacgtaatttgcagtttccattaatttccaaaagtggatacataaggaagctcatttcagaatctagtgatgctgt |
229 |
Q |
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| T |
39777385 |
tattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctgt |
39777484 |
T |
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| Q |
230 |
tgatgatgttccattaattgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggata |
314 |
Q |
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| T |
39777485 |
tgatgatgttccattaattgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggata |
39777569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 130 - 314
Target Start/End: Complemental strand, 47798758 - 47798574
Alignment:
| Q |
130 |
tattgaattatttttcataactctaacgtaatttgcagtttccattaatttccaaaagtggatacataaggaagctcatttcagaatctagtgatgctgt |
229 |
Q |
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| T |
47798758 |
tattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctgt |
47798659 |
T |
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| Q |
230 |
tgatgatgttccattaattgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggata |
314 |
Q |
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| T |
47798658 |
tgctgatgttccattaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggata |
47798574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 33220123 - 33220074
Alignment:
| Q |
12 |
agagagagaagaaggtttttccaccggcgataacgttgttgagagaaacc |
61 |
Q |
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| T |
33220123 |
agagagagaagaaggtttttccagcggcgataacgttgttgagagaaacc |
33220074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 33220054 - 33220020
Alignment:
| Q |
87 |
cttcgtgttttaagaaggaatatggtgaagatgga |
121 |
Q |
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| T |
33220054 |
cttcgtgttttaagaaggaatatggtgaagatgga |
33220020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 5677906 - 5677843
Alignment:
| Q |
247 |
ttgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgg |
310 |
Q |
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| T |
5677906 |
ttgaactctccgatgttcctggtggagcagaagcatttgaactagcagcaaaattctgctacgg |
5677843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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