View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_2 (Length: 592)
Name: NF10124_2
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_2 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 28 - 569
Target Start/End: Original strand, 2090223 - 2090764
Alignment:
| Q |
28 |
catatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg |
127 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090223 |
catataccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg |
2090322 |
T |
|
| Q |
128 |
gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgtctataatatttcttgaactgacattgcaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2090323 |
gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgtctataatatttcttgaacttacattgcaa |
2090422 |
T |
|
| Q |
228 |
cacatcactaatgagcaccaattaaaaaattgttctaggccataaaatgggtgaggggaaaggtgaggaaacaccaaaggttgtaatggatactcctttg |
327 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090423 |
cacatcactaatgagcaccaattaaaaaattgttgtaggccataaaatgggtgaggggaaaggtgaggaaacaccaaaggttgtaatggatactcctttg |
2090522 |
T |
|
| Q |
328 |
gaagtgttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaag |
427 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090523 |
gaagtgttgtggttaggatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaag |
2090622 |
T |
|
| Q |
428 |
ctctgtggggagacggttgaataaggatttaggcttccttatccccattgtcctcttctttctaaaaattttaccctccatttaaagagtgattatgatt |
527 |
Q |
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| T |
2090623 |
ctctgtggggagatggttgaataaggatttaggcttccttatccccattgtcctcttctttctaaaaattttaccctccatttaaagagtgattatgatt |
2090722 |
T |
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| Q |
528 |
atcaagaagaattgataaagataatgataggcgagtgtgatg |
569 |
Q |
| |
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| T |
2090723 |
atcaagaagaattgataaagataatgataggcgagtgtgatg |
2090764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 488
Target Start/End: Complemental strand, 2878809 - 2878654
Alignment:
| Q |
333 |
gttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaagctctg |
432 |
Q |
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|||||| |||||| | ||||||||||| | ||||||||||||||| ||||||||||||| || || | || || ||| ||||| ||||||| | | |
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| T |
2878809 |
gttgtgtttagaacgtgattacgccattcattcgagacacacatagcttttgattgatcctccaacgacaacctacaaaatattttcgtttgaatattta |
2878710 |
T |
|
| Q |
433 |
tggggagacggttgaataaggatttaggcttccttatccccattgtcctcttcttt |
488 |
Q |
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|||||||| |||||| |||||| | ||||||||| ||||||| || ||||||||| |
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| T |
2878709 |
tggggagattgttgaagaaggatctgggcttccttttccccatagttctcttcttt |
2878654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 2879114 - 2878944
Alignment:
| Q |
28 |
catatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg |
127 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | |||||| ||||||| || || ||||||||||||| | | ||||||| ||||||||| | |
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| T |
2879114 |
catatgccagagcagcatatgaatacccaccagaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaata |
2879015 |
T |
|
| Q |
128 |
gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgt |
198 |
Q |
| |
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||||||||||||| || || |||| | |||||| || ||||||||||| | ||| ||||||||||||| |
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| T |
2879014 |
atagacaccacgcaagatgttggtagcctcaccatcattgtggcaaaacaatagtaagccattgcatgtgt |
2878944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 2727332 - 2727373
Alignment:
| Q |
354 |
cgccatgagtgcgagacacacatagcctttgattgatccttc |
395 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
2727332 |
cgccatgagtgtgagacacacatagcttttgattgatccttc |
2727373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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