View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10124_3 (Length: 559)
Name: NF10124_3
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 39695340 - 39694927
Alignment:
| Q |
18 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695340 |
tcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
39695241 |
T |
|
| Q |
118 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
217 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695240 |
aatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
39695141 |
T |
|
| Q |
218 |
aagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttgaactg |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39695140 |
aagcaactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattatttttttgaaatcatccacttgttgaactg |
39695041 |
T |
|
| Q |
318 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695040 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
39694941 |
T |
|
| Q |
418 |
tcagcacattgtta |
431 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39694940 |
tcagcacattgtta |
39694927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 39704252 - 39703852
Alignment:
| Q |
18 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| |||||||| |
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|
| T |
39704252 |
tcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaa |
39704153 |
T |
|
| Q |
118 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
217 |
Q |
| |
|
||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| | |
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|
| T |
39704152 |
aatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtc |
39704053 |
T |
|
| Q |
218 |
aagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttgaactg |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| || |||||| |||||||||||||||| |
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|
| T |
39704052 |
acactactttggattgctattggagttgctaagaatatacttgaactccatagtggtaggattccaaatatctttttgaaatcttccacttgttgaactg |
39703953 |
T |
|
| Q |
318 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
417 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
39703952 |
tgcatagtttccatgatgatttcttaattgagccatctgattttaggtctgcatcagttatcagagttgcgcgattgaagaacctgcatttgcatataga |
39703853 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
|
|
| T |
39703852 |
t |
39703852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 39929125 - 39929531
Alignment:
| Q |
20 |
aacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaa |
119 |
Q |
| |
|
||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |
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|
| T |
39929125 |
aacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaa |
39929224 |
T |
|
| Q |
120 |
tgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaa |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| || || |
|
|
| T |
39929225 |
tgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttgaagtataatgaa |
39929324 |
T |
|
| Q |
220 |
gctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttgaactgtg |
319 |
Q |
| |
|
| |||| ||| |||||||| ||| || ||||| |||||||| ||| ||||||| ||||||| || |||||| ||||||||||||| |||| |
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|
| T |
39929325 |
gtccatttgcattactattggaattgataggaatagacttgaagtccataatggtaatattccaactatttttttgaaatcttccacttgttgaattgtg |
39929424 |
T |
|
| Q |
320 |
catagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatc |
419 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| ||| | ||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
39929425 |
catagtctccatgatgatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttgaaaaacctgcatttgcatatcgatc |
39929524 |
T |
|
| Q |
420 |
agcacat |
426 |
Q |
| |
|
||||||| |
|
|
| T |
39929525 |
agcacat |
39929531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 39934775 - 39935024
Alignment:
| Q |
18 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
117 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| | ||| | ||||| ||||||||||| ||| || ||||| ||||||||||| ||||| || |
|
|
| T |
39934775 |
tcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaa |
39934874 |
T |
|
| Q |
118 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
39934875 |
aatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaacc |
39934974 |
T |
|
| Q |
218 |
aagctactttggattgctattggagttgctaagaatatacttgaagacca |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
39934975 |
aagctactttggattgctattggagttgataggaatatacttgaagacca |
39935024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 456 - 559
Target Start/End: Complemental strand, 39694896 - 39694793
Alignment:
| Q |
456 |
gcttcaagtatattcttctttcattgcttaagtatctagaacttctagtttctattagaaaaagcataactaacaaatgaaacaatcaagccaataaaag |
555 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39694896 |
gcttcaagtatattctcctttcattgcttaagtatctggaacttctagtttctattagaaaaagcataactaacaaatgaaacaatcaagccaataaaag |
39694797 |
T |
|
| Q |
556 |
ttgg |
559 |
Q |
| |
|
|||| |
|
|
| T |
39694796 |
ttgg |
39694793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 8e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 38061800 - 38062191
Alignment:
| Q |
18 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
|
| Q |
117 |
aaatgggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtac |
213 |
Q |
| |
|
|||| | || ||||||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
|
| Q |
214 |
aaccaagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttga |
313 |
Q |
| |
|
|| ||| | | | | || |||||||| ||| | ||||| |||||||| ||| | ||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
38062000 |
aatgaagaaattctcggttactattggaattgaaaggaatagacttgaagtccatagtggtaatattccaattatttttttgaaatcttccacttgttga |
38062099 |
T |
|
| Q |
314 |
actgtgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgca |
405 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
38062100 |
actgtgcatagtctccatgatgaattcttaactgagccatctgagtttaggtctgcatcagttattaaagctgcacgattgaagaacctgca |
38062191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 38180844 - 38180949
Alignment:
| Q |
326 |
ctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcaca |
425 |
Q |
| |
|
||||||||||| || |||||| |||||||||| ||||||||||||||| ||||||||| ||| |||||||| ||| | |||||||||||| ||||| ||| |
|
|
| T |
38180844 |
ctccatgatgacttcttaacttagccatctgagtttaggtctgcatcaattattagagttgcacgattgaataactttcatttgcatatatatcagtaca |
38180943 |
T |
|
| Q |
426 |
ttgtta |
431 |
Q |
| |
|
|||||| |
|
|
| T |
38180944 |
ttgtta |
38180949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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