View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_5 (Length: 519)

Name: NF10124_5
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_5
NF10124_5
[»] chr4 (20 HSPs)
chr4 (18-485)||(8259992-8260467)
chr4 (18-485)||(8273410-8273885)
chr4 (241-287)||(8297863-8297909)
chr4 (243-307)||(20394610-20394674)
chr4 (243-284)||(7852614-7852655)
chr4 (243-283)||(35777769-35777809)
chr4 (243-285)||(49400606-49400648)
chr4 (243-284)||(7444456-7444497)
chr4 (243-284)||(24175468-24175509)
chr4 (243-284)||(37383824-37383865)
chr4 (243-284)||(51834909-51834950)
chr4 (246-286)||(45900222-45900262)
chr4 (243-287)||(50341937-50341981)
chr4 (243-286)||(31174721-31174764)
chr4 (243-285)||(49084471-49084513)
chr4 (241-283)||(49951758-49951800)
chr4 (243-284)||(12618764-12618805)
chr4 (243-284)||(25115333-25115374)
chr4 (243-283)||(47995807-47995847)
chr4 (247-279)||(50426989-50427021)
[»] chr3 (7 HSPs)
chr3 (126-240)||(27003457-27003572)
chr3 (243-285)||(42846076-42846118)
chr3 (243-287)||(39551925-39551969)
chr3 (243-306)||(48180241-48180304)
chr3 (249-287)||(45529195-45529233)
chr3 (243-285)||(49362424-49362466)
chr3 (243-284)||(52638228-52638269)
[»] chr5 (9 HSPs)
chr5 (243-287)||(30501210-30501254)
chr5 (243-287)||(30541553-30541597)
chr5 (243-283)||(18229672-18229712)
chr5 (243-284)||(34899206-34899247)
chr5 (243-287)||(16667362-16667406)
chr5 (243-287)||(30104796-30104840)
chr5 (247-306)||(112560-112619)
chr5 (243-281)||(9276650-9276688)
chr5 (243-279)||(17692262-17692298)
[»] chr8 (15 HSPs)
chr8 (243-287)||(16723265-16723309)
chr8 (243-287)||(37813473-37813517)
chr8 (243-286)||(2258161-2258204)
chr8 (252-287)||(42636445-42636480)
chr8 (241-287)||(1876550-1876596)
chr8 (243-284)||(4384205-4384246)
chr8 (243-283)||(36356022-36356062)
chr8 (243-278)||(3146037-3146072)
chr8 (243-277)||(2250356-2250390)
chr8 (243-284)||(27801296-27801337)
chr8 (243-284)||(28207619-28207660)
chr8 (243-307)||(884388-884452)
chr8 (243-279)||(1369929-1369965)
chr8 (248-284)||(12684569-12684605)
chr8 (243-283)||(33013041-33013081)
[»] chr7 (10 HSPs)
chr7 (243-287)||(27123266-27123310)
chr7 (243-285)||(44537335-44537377)
chr7 (247-287)||(28770469-28770509)
chr7 (139-216)||(33627457-33627534)
chr7 (243-287)||(21727476-21727520)
chr7 (243-286)||(39321052-39321095)
chr7 (243-281)||(43234788-43234826)
chr7 (243-284)||(10031991-10032032)
chr7 (245-281)||(23015712-23015748)
chr7 (243-287)||(43224157-43224201)
[»] chr2 (11 HSPs)
chr2 (243-304)||(9449023-9449084)
chr2 (243-287)||(1334954-1334998)
chr2 (243-307)||(14295601-14295664)
chr2 (243-288)||(34904858-34904903)
chr2 (243-307)||(19890259-19890323)
chr2 (243-287)||(20064903-20064947)
chr2 (243-287)||(31452416-31452460)
chr2 (242-285)||(6083971-6084014)
chr2 (246-284)||(4762344-4762382)
chr2 (245-287)||(24389695-24389737)
chr2 (243-283)||(31017378-31017418)
[»] chr1 (18 HSPs)
chr1 (241-306)||(39973865-39973930)
chr1 (243-284)||(47187891-47187932)
chr1 (243-283)||(8794412-8794452)
chr1 (243-287)||(39150574-39150618)
chr1 (241-287)||(42573837-42573883)
chr1 (243-284)||(39156256-39156297)
chr1 (243-283)||(38748791-38748831)
chr1 (243-279)||(44829272-44829308)
chr1 (243-283)||(48022423-48022463)
chr1 (243-286)||(8365496-8365539)
chr1 (243-286)||(8372988-8373031)
chr1 (243-284)||(2995041-2995082)
chr1 (243-284)||(7212768-7212809)
chr1 (243-284)||(8043875-8043916)
chr1 (243-284)||(34232777-34232818)
chr1 (253-286)||(43397097-43397130)
chr1 (243-287)||(38491213-38491257)
chr1 (243-283)||(40460793-40460833)
[»] chr6 (7 HSPs)
chr6 (139-242)||(31493493-31493597)
chr6 (139-242)||(31498882-31498986)
chr6 (243-286)||(3766270-3766313)
chr6 (243-284)||(1479162-1479203)
chr6 (243-284)||(2692500-2692541)
chr6 (243-287)||(1840975-1841019)
chr6 (243-287)||(30739591-30739635)
[»] scaffold0036 (1 HSPs)
scaffold0036 (243-306)||(62595-62658)
[»] scaffold0010 (1 HSPs)
scaffold0010 (241-287)||(26693-26739)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 8260467 - 8259992
Alignment:
Q  18 aagtggtgtattggttggattcctttgcctaattgttggtcctgatttcaagtctcactcatgccaatattcacaaaaccgccgggtcactggttttcac 117  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||     
T  8260467 aagtggtgtattggttagattcctttgcctagttgttggtcctgatttcaagtctcactcatgccaattttcacaaaaccgccggatcattggttttcat 8260368  T
Q  118 cggatttggccggttttcatgggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggaccg- 216  Q
    ||| ||||||| |||||          |||||||||||||||||||||||||||||||||| ||||||  |||||||| | ||| || |||||| ||||     
T  8260367 cgggtttggccagtttt----------caccggtttaactgcatagccgatccaatatgcagaccgaaccggacaccctaccggttctcggttgaaccgg 8260278  T
Q  217 -------------tccgagccggtttttaaaactatgcattttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaa 303  Q
                 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |  | ||||||||||    
T  8260277 tccgaccggccgatccaagccggtttttaaaactatgctttttaaaagaataattactaaatttgggatgcttaaagggtgcccctagggcattcgttaa 8260178  T
Q  304 caa-agccaaaaacat--ggtggtaactatatatatannnnnnnnatgtttgcttcaaaaatgctttgaagggt--nnnnnnngttagtgaatttcttat 398  Q
    ||| | ||||||||||  |||||||||||||||| |         |||||||||||||||||||||||||||||         ||||| |||||||||||    
T  8260177 caagatccaaaaacataaggtggtaactatatat-ttttttttttatgtttgcttcaaaaatgctttgaagggtaaaaaaaaagttagagaatttcttat 8260079  T
Q  399 cccaatcctccgtgcttctctctctattggttcttctgtttgactatttctttctattgattcttttgtttaaatgattctctctat 485  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  8260078 cccaatcctccatgcttctctccctattggttcttctgtttgactatttctctctattgattcttttgtttgaatgattctctctat 8259992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 8273885 - 8273410
Alignment:
Q  18 aagtggtgtattggttggattcctttgcctaattgttggtcctgatttcaagtctcactcatgccaatattcacaaaaccgccgggtcactggttttcac 117  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||     
T  8273885 aagtggtgtattggttagattcctttgcctagttgttggtcctgatttcaagtctcactcatgccaattttcacaaaaccgccggatcattggttttcat 8273786  T
Q  118 cggatttggccggttttcatgggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggaccg- 216  Q
    ||| ||||||| |||||          ||||||||||||||||||||| |||||||||||||||||||  |||||||| | ||| || ||| || ||||     
T  8273785 cgggtttggccagtttt----------caccggtttaactgcatagccaatccaatatgcaaaccgaaccggacaccctaccggttctcgggtgaaccgg 8273696  T
Q  217 -------------tccgagccggtttttaaaactatgcattttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaa 303  Q
                 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |  | ||||||||||    
T  8273695 tccaaccggccgatccaagccggtttttaaaactatgctttttaaaagaataattactaaatttgggatgcttaaagggtgcccctagggcattcgttaa 8273596  T
Q  304 caa-agccaaaaacat--ggtggtaactatatatatannnnnnnnatgtttgcttcaaaaatgctttgaagggt--nnnnnnngttagtgaatttcttat 398  Q
    ||| | ||||||||||  || || |||||||||| |         |||||||||||||||||||||||||||||         ||||| |||||||||||    
T  8273595 caagatccaaaaacataagggggaaactatatat-ttttttttttatgtttgcttcaaaaatgctttgaagggtaaaaaaaaagttagagaatttcttat 8273497  T
Q  399 cccaatcctccgtgcttctctctctattggttcttctgtttgactatttctttctattgattcttttgtttaaatgattctctctat 485  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  8273496 cccaatcctccatgcttctctccctattggttcttctgtttgactatttctctctattgattcttttgtttgaatgattctctctat 8273410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 8297909 - 8297863
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8297909 cattttaaaagaataattactaaatttgggatgcttaaagagtgccc 8297863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 20394674 - 20394610
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  | |||| |||||||||||    
T  20394674 ttttaaaagaataattactaaatttgggatgcttaaagagtgctctggagacactcgttaacaaa 20394610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 7852614 - 7852655
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  7852614 ttttaaaagaataattactaaatttaggatgcttaaagagtg 7852655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 35777769 - 35777809
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  35777769 ttttaaaagaataattactaaatttgggatggttaaagagt 35777809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 49400648 - 49400606
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  49400648 ttttaaaagaataattactaaatttaggatgcttaaatagtgc 49400606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 7444456 - 7444497
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  7444456 ttttaaaagtataattactaaatttgggatgcttaaaaagtg 7444497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 24175468 - 24175509
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  24175468 ttttaaaagaatatttactaaatttaggatgcttaaagagtg 24175509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 37383824 - 37383865
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  37383824 tttttaaagaataattactaaattttggatgcttaaagagtg 37383865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 51834950 - 51834909
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  51834950 ttttaaaagaataattgctaaatttaggatgcttaaagagtg 51834909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 45900222 - 45900262
Alignment:
Q  246 taaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  45900222 taaaagaataattgctaaatttaggatgcttaaagagtgcc 45900262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 50341937 - 50341981
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||||||||||||| ||||||| | |||||||    
T  50341937 ttttaaaagaataattactaaatttggaatgcttacaaagtgccc 50341981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 31174721 - 31174764
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    |||||||||||||||||| ||||||  |||||||||||||||||    
T  31174721 ttttaaaagaataattacaaaattttagatgcttaaagagtgcc 31174764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 49084471 - 49084513
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    ||||||||||||||||||||||||| ||||  |||||||||||    
T  49084471 ttttaaaagaataattactaaatttaggataattaaagagtgc 49084513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 49951758 - 49951800
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||||||||||||||||| ||||| | |||||||||||||    
T  49951758 cattttaaaagaataattacttaatttagcatgcttaaagagt 49951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 12618764 - 12618805
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  12618764 ttttaaaaaaataatttctaaatttggaatgcttaaagagtg 12618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 25115333 - 25115374
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  25115333 ttttaaaataataattactaaattttggattcttaaagagtg 25115374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 47995807 - 47995847
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    |||||||||| |||||||||||||| | |||||||||||||    
T  47995807 ttttaaaagagtaattactaaatttagaatgcttaaagagt 47995847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 50427021 - 50426989
Alignment:
Q  247 aaaagaataattactaaatttgggatgcttaaa 279  Q
    |||||||||||||||||||||| ||||||||||    
T  50427021 aaaagaataattactaaatttgagatgcttaaa 50426989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 27003457 - 27003572
Alignment:
Q  126 gccggttttcatgggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggacc-gtccgagcc 224  Q
    |||||||||||  | ||| |||||||||||||||||||||||||||  ||||| ||||||  ||| |||||| ||  ||  ||||||||| |||||||||    
T  27003457 gccggttttcaccgattctcaccggtttaactgcatagccgatccatcatgcagaccgaaccggataccccaccgattcttggttggaccggtccgagcc 27003556  T
Q  225 ggtttttaaaactatg 240  Q
    ||||||||||||||||    
T  27003557 ggtttttaaaactatg 27003572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 42846076 - 42846118
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  42846076 ttttcaaagaataattactaaatttaggatgcttaaagagtgc 42846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 39551925 - 39551969
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||    
T  39551925 ttttaaaagaataattgctaaatttggtatgcttaaatagtgccc 39551969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 48180241 - 48180304
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaa 306  Q
    ||||||||||||||||  |||||| ||||||||||||||||| ||  | |||| ||||||||||    
T  48180241 ttttaaaagaataattgttaaattggggatgcttaaagagtgtcccggagacactcgttaacaa 48180304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 45529195 - 45529233
Alignment:
Q  249 aagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  45529195 aagaatattttctaaatttgggatgcttaaagagtgccc 45529233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 49362424 - 49362466
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||    
T  49362424 ttttaaaagaataattattaaatttgggatgtttaaaaagtgc 49362466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 52638228 - 52638269
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  52638228 ttttaaaataataattactaaattttggattcttaaagagtg 52638269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 30501210 - 30501254
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30501210 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 30501254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 30541553 - 30541597
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30541553 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 30541597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 18229672 - 18229712
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18229672 ttttaaaagaataattactaaatttgggatgcttaaagagt 18229712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 34899206 - 34899247
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  34899206 ttttaaaagaataattactatatttgggatgcttaaagagtg 34899247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 16667362 - 16667406
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||    
T  16667362 ttttaaaagaataattattaaatttgtgatgcttaaagagtgccc 16667406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 30104840 - 30104796
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||| |||| |||||||||||||||||||||||||||||||    
T  30104840 ttttaaaaaaatagttactaaatttgggatgcttaaagagtgccc 30104796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 112560 - 112619
Alignment:
Q  247 aaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaa 306  Q
    ||||||||||||||||| |||  ||||||||||||||||||   ||||| ||||||||||    
T  112560 aaaagaataattactaattttatgatgcttaaagagtgccccgatgacactcgttaacaa 112619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 9276650 - 9276688
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaaga 281  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  9276650 ttttaaaaaaataattactaaatttgggatgcttgaaga 9276688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 17692298 - 17692262
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaa 279  Q
    |||||| |||||||||||||||||| |||||||||||    
T  17692298 ttttaagagaataattactaaatttaggatgcttaaa 17692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 16723265 - 16723309
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  16723265 ttttaaaagaataattacaaaatttgggatgcttaaagagtgccc 16723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 37813473 - 37813517
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  37813473 ttttaaaagaataattactaaatttgggatccttaaagagtgccc 37813517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 2258161 - 2258204
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  2258161 ttttaaaagaataattattaaatttgggatgcttaaagagtgcc 2258204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 42636445 - 42636480
Alignment:
Q  252 aataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||||||||||||||||||||||    
T  42636445 aataattactaaatttgggatgcttaaagagtgccc 42636480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 1876550 - 1876596
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  1876550 cattttaaaagaataattacttaatttagcatgcttaaagagtgccc 1876596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 4384205 - 4384246
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  4384205 ttttaaaagaataattactaaatttagggtgcttaaagagtg 4384246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 36356022 - 36356062
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  36356022 ttttaaaagaataattacttaatttgggattcttaaagagt 36356062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 3146072 - 3146037
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaa 278  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3146072 ttttaaaagaataattactaaatatgggatgcttaa 3146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 2250390 - 2250356
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgctta 277  Q
    ||||||||||||||||| |||||||||||||||||    
T  2250390 ttttaaaagaataattattaaatttgggatgctta 2250356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 27801296 - 27801337
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||||||||||||||||||| | ||| ||||||||||    
T  27801296 ttttaaaagaataattactaaatttagaatgattaaagagtg 27801337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 28207660 - 28207619
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||| |||  ||||||||||||||||||||||||    
T  28207660 ttttaaaagaattattgttaaatttgggatgcttaaagagtg 28207619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 884452 - 884388
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaaa 307  Q
    ||||| |||||||||||||||||||  |||| ||||||||||  |  |||||| |||||||||||    
T  884452 ttttataagaataattactaaatttatgatgtttaaagagtgttccagtgacactcgttaacaaa 884388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 1369929 - 1369965
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaa 279  Q
    |||||||||||||||| |||||||| |||||||||||    
T  1369929 ttttaaaagaataattgctaaatttaggatgcttaaa 1369965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 12684569 - 12684605
Alignment:
Q  248 aaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  12684569 aaagaataattattaaatttggaatgcttaaagagtg 12684605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 33013081 - 33013041
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||||||||||||  ||||||||| |||||||||||||    
T  33013081 ttttaaaagaataattgttaaatttggtatgcttaaagagt 33013041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 27123310 - 27123266
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  27123310 ttttaaaagaatgattactaaatttgggatgcttaaagagtgccc 27123266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 44537377 - 44537335
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  44537377 ttttaaaagaataattactaaatatgggatgcttaaagagtgc 44537335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 28770509 - 28770469
Alignment:
Q  247 aaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  28770509 aaaagaataattactaattttgggatgcttaaagagtgccc 28770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 33627534 - 33627457
Alignment:
Q  139 ggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggaccg 216  Q
    ||||| |||||||||||||||||||| ||||||  ||||| ||||||  ||| |||||| ||| ||| ||||||||||    
T  33627534 ggttctcaccggtttaactgcatagctgatccatcatgcagaccgaaccggataccccaccggttcctggttggaccg 33627457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 21727476 - 21727520
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||||| | |||||||||||| |||||    
T  21727476 ttttaaaagaataattactaaattggagatgcttaaagaatgccc 21727520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 39321052 - 39321095
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||    
T  39321052 ttttaaaagaataattgttaaatttggtatgcttaaagagtgcc 39321095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 43234826 - 43234788
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaaga 281  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  43234826 ttttaaaagaataattactaaatataggatgcttaaaga 43234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 10031991 - 10032032
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| |||||||||||| ||||| ||||||||||||||    
T  10031991 ttttaaaaaaataattactaattttggaatgcttaaagagtg 10032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 23015712 - 23015748
Alignment:
Q  245 ttaaaagaataattactaaatttgggatgcttaaaga 281  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  23015712 ttaaaagaataattactaaatttggtatgtttaaaga 23015748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 43224157 - 43224201
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||  |||| ||| |||||||||||||||||||    
T  43224157 ttttaaaagaataatatctaattttaggatgcttaaagagtgccc 43224201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 9449023 - 9449084
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaac 304  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    |||||||||||||    
T  9449023 ttttaaaagaataattactaaatttgagttgcttaaagagtgccccgaagacattcgttaac 9449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 1334954 - 1334998
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  1334954 tttttaaagaataattattaaatttgggatgcttaaagagtgccc 1334998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 14295664 - 14295601
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaaa 307  Q
    |||||||||||||||||||||||||||||| |||||||| ||  |||| |||| |||||||||||    
T  14295664 ttttaaaagaataattactaaatttgggattcttaaagaatg-tcatgggacactcgttaacaaa 14295601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 34904858 - 34904903
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccca 288  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||    
T  34904858 ttttaaaagaataattactaaatatgagatacttaaagagtgccca 34904903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 19890259 - 19890323
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaaa 307  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||  |  ||| |||||||||||    
T  19890259 ttttaaaagaataattactaaatttaggatgcttaaatagtaccccggaaacactcgttaacaaa 19890323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 20064947 - 20064903
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||    
T  20064947 ttttaaaagaataattactatatttaggatccttaaagagtgccc 20064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 31452416 - 31452460
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||    
T  31452416 ttttaaaagaataattactaaacttgggatgtttaaagactgccc 31452460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 6083971 - 6084014
Alignment:
Q  242 attttaaaagaataattactaaatttgggatgcttaaagagtgc 285  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  6083971 attttaaaataataattactaaatttagtatgcttaaagagtgc 6084014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 4762382 - 4762344
Alignment:
Q  246 taaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  4762382 taaaataataattactaaatttgggatgcttaaacagtg 4762344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 24389695 - 24389737
Alignment:
Q  245 ttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||| ||||| | |||||||||||||||||    
T  24389695 ttaaaagaataattacttaatttagcatgcttaaagagtgccc 24389737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 31017378 - 31017418
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    |||| ||||||||||||||||||||||||| ||| ||||||    
T  31017378 tttttaaagaataattactaaatttgggatacttgaagagt 31017418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 39973930 - 39973865
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaa 306  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||  | |||| ||||||||||    
T  39973930 cattttaaaagaataattacttaatttagcatgcttaaagagtgccccggagacactcgttaacaa 39973865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 47187891 - 47187932
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  47187891 ttttaaatgaataattactaaatttgggatgcttaaagagtg 47187932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 8794452 - 8794412
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  8794452 ttttaaaagaataattactaaatttaggatgcttaaagagt 8794412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 39150618 - 39150574
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  39150618 ttttacaagaataattactaaatttaggatgcttaaagagtgccc 39150574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 42573837 - 42573883
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  42573837 cattttaaaagaataattacttaatttagcatgcttaaagagtgccc 42573883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 39156297 - 39156256
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  39156297 ttttaaaagaataattactaaatttttgatgcttaaagagtg 39156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 38748791 - 38748831
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  38748791 ttttaaaagaataatttctaaatttggtatgcttaaagagt 38748831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 44829308 - 44829272
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaa 279  Q
    |||| ||||||||||||||||||||||||||||||||    
T  44829308 tttttaaagaataattactaaatttgggatgcttaaa 44829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 48022423 - 48022463
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  48022423 ttttaaaacaataattactaaatatgggatgcttaaagagt 48022463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 8365539 - 8365496
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8365539 ttttaaaagaataattattaaatttaggatgtttaaagagtgcc 8365496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 8373031 - 8372988
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8373031 ttttaaaagaataattattaaatttaggatgtttaaagagtgcc 8372988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 2995041 - 2995082
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  2995041 ttttaaaataataattactaaattttggattcttaaagagtg 2995082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 7212809 - 7212768
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||| |||||||||||||||| ||| |||||||||||    
T  7212809 ttttaaaagtataattactaaatttgagatacttaaagagtg 7212768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 8043916 - 8043875
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||    
T  8043916 ttttaaaagaataattattaaatttaggatgcttaaacagtg 8043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 34232777 - 34232818
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  34232777 ttttaaaagaataattgctaaattaaggatgcttaaagagtg 34232818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 43397097 - 43397130
Alignment:
Q  253 ataattactaaatttgggatgcttaaagagtgcc 286  Q
    ||||||||||||||| ||||||||||||||||||    
T  43397097 ataattactaaatttaggatgcttaaagagtgcc 43397130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 38491257 - 38491213
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||| | ||||||||||||||||||||| || |||||||||||    
T  38491257 ttttaacataataattactaaatttgggattctgaaagagtgccc 38491213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 40460793 - 40460833
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagt 283  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  40460793 ttttaaatgaataattattaaattttggatgcttaaagagt 40460833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 31493597 - 31493493
Alignment:
Q  139 ggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggacc-gtccgagccggtttttaaaact 237  Q
    ||||| || ||||||||||||||||||||||||  ||||| ||||||  ||| |||||| ||  | | ||||||||| |||| ||||| |||||||||||    
T  31493597 ggttcccatcggtttaactgcatagccgatccatcatgcagaccgaacaggataccccaccgatttctggttggaccggtccaagccgatttttaaaact 31493498  T
Q  238 atgca 242  Q
    |||||    
T  31493497 atgca 31493493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 31498986 - 31498882
Alignment:
Q  139 ggttcgcaccggtttaactgcatagccgatccaatatgcaaaccgaattggacaccccatcggctcccggttggacc-gtccgagccggtttttaaaact 237  Q
    ||||| || ||||||||||||||||||||||||  ||||| ||||||  ||| |||||| ||  | | ||||||||| |||| ||||| |||||||||||    
T  31498986 ggttcccatcggtttaactgcatagccgatccatcatgcagaccgaacaggataccccaccgatttctggttggaccggtccaagccgatttttaaaact 31498887  T
Q  238 atgca 242  Q
    |||||    
T  31498886 atgca 31498882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 3766313 - 3766270
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcc 286  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  3766313 ttttaaaagaataatttccaaatttgggatgcttaaagagtgcc 3766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 1479162 - 1479203
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  1479162 ttttaaaagaatgattactaaatttgggatctttaaagagtg 1479203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 2692500 - 2692541
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtg 284  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  2692500 ttttaaaataataattactaaattttggattcttaaagagtg 2692541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 1841019 - 1840975
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    ||||||||||||||||| |||||||   |||||||||||||||||    
T  1841019 ttttaaaagaataattattaaatttaatatgcttaaagagtgccc 1840975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 30739635 - 30739591
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||| |||||||||||||||||| | || ||||||||||||||    
T  30739635 ttttaatagaataattactaaatttagaatacttaaagagtgccc 30739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 62595 - 62658
Alignment:
Q  243 ttttaaaagaataattactaaatttgggatgcttaaagagtgcccatgtgacattcgttaacaa 306  Q
    ||||||||||||||||||||||| || |||||||||||||| |||  | |||| ||||||||||    
T  62595 ttttaaaagaataattactaaatatgagatgcttaaagagtaccctggagacactcgttaacaa 62658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 26739 - 26693
Alignment:
Q  241 cattttaaaagaataattactaaatttgggatgcttaaagagtgccc 287  Q
    |||||||||| |||||||||| ||||| | |||||||||||||||||    
T  26739 cattttaaaataataattacttaatttagcatgcttaaagagtgccc 26693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University