View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_6 (Length: 411)
Name: NF10124_6
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_6 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 1869404 - 1869033
Alignment:
| Q |
12 |
agagaaccaaatatatcacatgtcgtttcaccaaatagagtccatcctcacatcatcgtcatcctcaaatatataattccttacaatttgatgaccatat |
111 |
Q |
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| T |
1869404 |
agagaaccaaatatatcacatgtcttttcaccaaatagagtccatcctcacatcatcgtcatcctcaaatatataattccttacaatttgatgaccatat |
1869305 |
T |
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| Q |
112 |
tgtaccactaacatctctttccaaacttcttattattgagataaaaacatatcctacatttttctaaaaggtttatgttaaccactctaaggtctcgcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869304 |
tgtaccactaacatctctttccaaacttcttattattgagataaaaacatatcctacatttttctaaaaggtttatgttaaccactctaaggtctcgcaa |
1869205 |
T |
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| Q |
212 |
ctctaggatcccttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869204 |
ctctaggatcccttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatc |
1869105 |
T |
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| Q |
312 |
ttaaccacctcccttcataccttcatgggcacatcttcatgaaagataggtagaaagtagggaccatactca |
383 |
Q |
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| T |
1869104 |
ttaaccacctcccttcataccttcatgggcacatcttcatgaaagataggtagaaagtagggaccatactca |
1869033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 1834750 - 1834590
Alignment:
| Q |
223 |
cttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1834750 |
cttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctc |
1834651 |
T |
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| Q |
323 |
ccttcataccttcatgggcacatcttcatgaaagataggtagaaagtagggaccatactca |
383 |
Q |
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| T |
1834650 |
ccttcataccttcatgggcacatcttcatgaaagataggtagaaagtagggaccatactca |
1834590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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