View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_8 (Length: 394)
Name: NF10124_8
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_8 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28255739 - 28256114
Alignment:
| Q |
1 |
caatgcctaacaaatctaagtagctccaaatggtaaaaatacccaaacttcatcatcaccttcagaataacaacaatgctcctaaacttctaacaaaaat |
100 |
Q |
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| T |
28255739 |
caatgcctaacaaatctaagtagctccaaatggtaaaaatacccaaacttcatcatcaccttcagaataacaacaatgctcctaaacttctaacaaaaat |
28255838 |
T |
|
| Q |
101 |
taataactatgatcatcgatcgatcaattcgagggaacatggtagtattttcctttacaaatacatctgtaaaccataggacaagactctgccatagaac |
200 |
Q |
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| T |
28255839 |
taataactatgatcatcgatcgatcaattcgagggaacatggtagtattttcctttacaaatacatctgtaaaccataggacaagactctgccatagaac |
28255938 |
T |
|
| Q |
201 |
atttgttgtaacctaccatgacccttttgcagggtgaacatggtccacatgcatgggaacaatctggtatggtggaaccggttggatagagttccattac |
300 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28255939 |
atttgttgtaacctaccatgactctcttgcagggtgaacatggtccacatgcatgggaacaatctggtatggtggaaccggttggatagagttccattac |
28256038 |
T |
|
| Q |
301 |
attgctaccttctc-tgctcctccacaacaaaatcacaaatatgtgaatcataattgatcattcacttcttgacaca |
376 |
Q |
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|||||||||||||| ||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28256039 |
attgctaccttctcttgctccttc-ctacaaaatcacaaatatgtgaatcacaattgatcattcacttcttgacaca |
28256114 |
T |
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