View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_9 (Length: 361)

Name: NF10124_9
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_9
NF10124_9
[»] chr1 (1 HSPs)
chr1 (13-361)||(29508808-29509156)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 29508808 - 29509156
Alignment:
Q  13 aatatccaaagcatcattaacatttccaattctacaaaacccattcaccaaagaattaaaagtaacctgatcaggagaaaacccttcctcagaaacctcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29508808 aatatccaaagcatcattaacatttccaattctacaaaacccattcaccaaagaattaaaagtaacctgatcaggagaaaacccttcctcagaaacctcc 29508907  T
Q  113 tgcacaaacctaagggcttcctcaacacgaccttctttgcaaaaaccattcaccaaaacattcacagaaacagttgtaagcaaacaaccataccccacca 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||    
T  29508908 agcacaaacctaagggcttcctcaacacgaccttctttgcaaaaaccattcaccaaaactttcacagaaacatttgtaagcaaacaaccataccccaaca 29509007  T
Q  213 tttgtttcttcatcttcaaagcaccattcaaatcaccttcttcaataaaaccctgcatcaacgtggtgaaagttatctcatcaggcttcaacccgtgatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29509008 tttgtttcttcatcttcaaagcaccattcaaatcaccttcttcaataaaaccctgcatcaacgtggtgaaagttatctcatcaggcttcaacccgtgatt 29509107  T
Q  313 tgccatttcctcaagcatcaaaattgcaggccttaattgatgtgcttta 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29509108 tgccatttcctcaagcatcaaaattgcaggccttaattgatgtgcttta 29509156  T

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