View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_high_1 (Length: 345)
Name: NF10124_high_1
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 3478423 - 3478529
Alignment:
| Q |
223 |
tattatatttgatgactattaaaagttctgaatattatttatgaatttggagnnnnnnnnctacgtaga-tttgactttaataatacaaaactaacatcc |
321 |
Q |
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| T |
3478423 |
tattatatttgatgactattaaaagttctgaatattatttagtaatttggagaaaaaaaactatttagattttgactttaataatacaaaattaacatcc |
3478522 |
T |
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| Q |
322 |
tttatac |
328 |
Q |
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||||||| |
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| T |
3478523 |
tttatac |
3478529 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 3477402 - 3477437
Alignment:
| Q |
72 |
tgatcattttctgctgaaagctaatttgactattgg |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
3477402 |
tgatcattttctcctgaaagctaatttgactattgg |
3477437 |
T |
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