View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10124_low_12 (Length: 297)
Name: NF10124_low_12
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 42 - 287
Target Start/End: Complemental strand, 31525118 - 31524873
Alignment:
| Q |
42 |
attgcattgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagtt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31525118 |
attgcattgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagtt |
31525019 |
T |
|
| Q |
142 |
gttatgtgttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactcta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31525018 |
gttatgtgttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgcagttgttactcta |
31524919 |
T |
|
| Q |
242 |
tgaatcattttgtgctttgacattggggaagaagactacctctgtg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31524918 |
tgaatcattttgtgctttgacattggggaagaagactgcctctgtg |
31524873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 42 - 287
Target Start/End: Original strand, 33366383 - 33366628
Alignment:
| Q |
42 |
attgcattgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagtt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33366383 |
attgcattgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagtt |
33366482 |
T |
|
| Q |
142 |
gttatgtgttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactcta |
241 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
33366483 |
gttatgtgttttatttgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgtagttgttactcta |
33366582 |
T |
|
| Q |
242 |
tgaatcattttgtgctttgacattggggaagaagactacctctgtg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33366583 |
tgaatcattttgtgctttgacattggggaagaagactgcctctgtg |
33366628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 42 - 287
Target Start/End: Complemental strand, 49195075 - 49194830
Alignment:
| Q |
42 |
attgcattgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagtt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49195075 |
attgcattgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagtt |
49194976 |
T |
|
| Q |
142 |
gttatgtgttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactcta |
241 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
49194975 |
gttatgtgttttatttgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgtagttgttactcta |
49194876 |
T |
|
| Q |
242 |
tgaatcattttgtgctttgacattggggaagaagactacctctgtg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49194875 |
tgaatcattttgtgctttgacattggggaagaagactgcctctgtg |
49194830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 41436949 - 41437031
Alignment:
| Q |
201 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctc |
283 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||| |||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
41436949 |
ttagtttaatctctctgtttgattctgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagactacctc |
41437031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 42934240 - 42934158
Alignment:
| Q |
201 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctc |
283 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||||| |||| |||||||||| |||||| ||||| |||||||| ||||| |
|
|
| T |
42934240 |
ttagtttaatctctctgtttgattatgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagaccacctc |
42934158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University