View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_13 (Length: 279)

Name: NF10124_low_13
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_13
NF10124_low_13
[»] chr2 (1 HSPs)
chr2 (1-262)||(4908072-4908333)
[»] chr6 (1 HSPs)
chr6 (9-38)||(21352236-21352265)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4908072 - 4908333
Alignment:
Q  1 agtagaaggtctaatgttaaggaagtggagaatgatgatgcttattcagatgcagttgagtcactgtcacatttaacagaatcattctctttgaactgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908072 agtagaaggtctaatgttaaggaagtggagaatgatgatgcttattcagatgcagttgagtcactgtcacatttaacagaatcattctctttgaactgta 4908171  T
Q  101 gtgtgagtggtgtaagtggattagataacttggaagctaagaagtttggaacattttctacagatcaacaaacaagagacttcatgatgaaccgtttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908172 gtgtgagtggtgtaagtggattagataacttggaagctaagaagtttggaacattttctacagatcaacaaacaagagacttcatgatgaaccgtttctt 4908271  T
Q  201 gccggccgcgaaggctatgacaatacaaccttctcaatattcttcaaaaaagccatctgtat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4908272 gccggccgcgaaggctatgacaatacaaccttctcaatattcttcaaaaaagccatctgtat 4908333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 21352236 - 21352265
Alignment:
Q  9 gtctaatgttaaggaagtggagaatgatga 38  Q
    ||||||||||||||||||||||||||||||    
T  21352236 gtctaatgttaaggaagtggagaatgatga 21352265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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