View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_15 (Length: 251)

Name: NF10124_low_15
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_15
NF10124_low_15
[»] chr5 (3 HSPs)
chr5 (1-180)||(9411194-9411372)
chr5 (1-116)||(14270716-14270831)
chr5 (32-105)||(1278223-1278296)
[»] chr8 (3 HSPs)
chr8 (1-117)||(29308672-29308788)
chr8 (11-96)||(10309158-10309242)
chr8 (27-117)||(9189208-9189296)
[»] chr1 (3 HSPs)
chr1 (1-117)||(27528170-27528287)
chr1 (1-105)||(32800554-32800658)
chr1 (30-117)||(34105954-34106039)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-117)||(371992-372108)
[»] chr2 (5 HSPs)
chr2 (2-117)||(15819792-15819905)
chr2 (11-114)||(34311952-34312055)
chr2 (1-78)||(41696567-41696644)
chr2 (39-115)||(36922526-36922602)
chr2 (65-106)||(41696508-41696549)
[»] chr4 (3 HSPs)
chr4 (30-118)||(54677035-54677121)
chr4 (18-80)||(34114858-34114921)
chr4 (32-115)||(48351739-48351822)
[»] chr3 (3 HSPs)
chr3 (11-71)||(1292228-1292288)
chr3 (11-96)||(1294763-1294847)
chr3 (11-79)||(34387435-34387504)
[»] chr7 (1 HSPs)
chr7 (16-60)||(34974881-34974926)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 9411372 - 9411194
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 100  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411372 tattcacctattttctctct--ttagtgttgttttttgtttatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 9411275  T
Q  101 ggagatgatccaaatccattagagttaaggatggcaaagcgggtcggcccaacctgttt-aactcgtctctcataagcccg 180  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  9411274 ggagaggatccaaatccattagagttaaggatggcaaagcgggtcggcccaacctgtttaaactcgtctctcttaaacccg 9411194  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14270831 - 14270716
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||    
T  14270831 tattcacctattttctctctctttaatgctgttttttgttcatttatgaaccaatcaaccattggatccgtaaaggagagggggctgcacaaaaaaggca 14270732  T
Q  101 ggagatgatccaaatc 116  Q
    ||||||||||||||||    
T  14270731 ggagatgatccaaatc 14270716  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 1278296 - 1278223
Alignment:
Q  32 ttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggaga 105  Q
    |||||| |||||||||||||||||||| |||||||  ||| |||||||||| ||||||||||||| ||| ||||    
T  1278296 tttttttttcatttatgaaccaatcaatcattggactagagaaggagagggagctgcacaaaaaaggcacgaga 1278223  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29308788 - 29308672
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  29308788 tattcacctattttatctctctttagtgctgttttttgttcatttatcaaccaatcaaccattggatcagaaaaggaaagggggctgcacaaaaaaggca 29308689  T
Q  101 ggagatgatccaaatcc 117  Q
    ||||| |||||||||||    
T  29308688 ggagaggatccaaatcc 29308672  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 10309242 - 10309158
Alignment:
Q  11 ttttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaa 96  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||    
T  10309242 ttttctctctatttagtgttgttttt-gttcatttatgaaccaatcaaccattgaattagaaaatgagagggagctgcacaaaaaa 10309158  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 9189208 - 9189296
Alignment:
Q  27 tgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatccaaatcc 117  Q
    ||||||||||| |||||| |  |||||||||| |||||||||| |||||||||| ||| |||| |||||| ||   ||| |||||||||||    
T  9189208 tgctgtttttttttcattaa--aaccaatcaatcattggatcaaaaaaggagagagggttgcataaaaaaggcgaaagaggatccaaatcc 9189296  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27528287 - 27528170
Alignment:
Q  1 tattcacctattttctctctctttagtgctgtttttt-gttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgc 99  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||    
T  27528287 tattcacctattttctcactctttagtgctgtttttttgttcatttatgaaccaatcaaccattggatcagaaaatgagaggaggctacacaaaaaaggc 27528188  T
Q  100 aggagatgatccaaatcc 117  Q
    |||||| |||||||||||    
T  27528187 aggagaggatccaaatcc 27528170  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32800658 - 32800554
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  32800658 tattcacctattttctctctctttagtgctgatttttgttcttttatgaaccaatcaactattggatcagaaaaggagaggaagctgcgcaaaaaatgca 32800559  T
Q  101 ggaga 105  Q
    |||||    
T  32800558 ggaga 32800554  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 34105954 - 34106039
Alignment:
Q  30 tgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatccaaatcc 117  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||  |||| | ||||||||||||| |||||||| |||||||||||    
T  34105954 tgttttttgttcatttatgagtcaatcaaccattagatcagaaaa--agagagagctgcacaaaaaaagcaggagaagatccaaatcc 34106039  T

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Target: scaffold0004 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 371992 - 372108
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgca 100  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||     
T  371992 tattcacatattttctttctctttagtgctgctttttgttcatttatgaaccaatcaaccgttggatcaaaaaaggagagggggctgcacaaaaaatgct 372091  T
Q  101 ggagatgatccaaatcc 117  Q
     |||| |||||||||||    
T  372092 agagaggatccaaatcc 372108  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 15819905 - 15819792
Alignment:
Q  2 attcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcag 101  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  15819905 attcacct-ttttctctctctttggtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaagaga-ggggctgcacaaaaaagacag 15819808  T
Q  102 gagatgatccaaatcc 117  Q
    |||| |||||||||||    
T  15819807 gagaggatccaaatcc 15819792  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 34312055 - 34311952
Alignment:
Q  11 ttttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatc 110  Q
    |||| ||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||||    
T  34312055 ttttttctttctttggtgttgttttttgttcatttatgagccaatcaaccattggatcagaaaaaaagagggggctgcacaaaaaaggcaggagaggatc 34311956  T
Q  111 caaa 114  Q
    ||||    
T  34311955 caaa 34311952  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41696644 - 41696567
Alignment:
Q  1 tattcacctattttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggag 78  Q
    ||||||||| |||||| |||||||  || ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  41696644 tattcaccttttttctatctctttgatgttgtcttttgttcatttatgaaccaatcaaccattcgatcagaaaaggag 41696567  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 36922602 - 36922526
Alignment:
Q  39 ttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatccaaat 115  Q
    |||| ||||||  |||||||| ||||||||||||||| ||||| |||||||||||||| ||| |||| |||||||||    
T  36922602 ttcaattatgagtcaatcaactattggatcagaaaagaagaggaggctgcacaaaaaaggcatgagaggatccaaat 36922526  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 41696549 - 41696508
Alignment:
Q  65 gatcagaaaaggagagggggctgcacaaaaaatgcaggagat 106  Q
    |||||||||||||||||||| | ||||||||| |||||||||    
T  41696549 gatcagaaaaggagagggggttacacaaaaaaggcaggagat 41696508  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 54677035 - 54677121
Alignment:
Q  30 tgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatccaaatcca 118  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||  ||| ||||||||||| | |||||| ||||||| ||||    
T  54677035 tgttttttgttcatttatgagtcaatcaaccattgaatcagaaaagtaga--gggttgcacaaaaaaggtaggagaggatccaattcca 54677121  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34114858 - 34114921
Alignment:
Q  18 tctctttagtgctgttttttgttcatttatgaaccaatcaa-ccattggatcagaaaaggagag 80  Q
    |||||||||| | |||| |||||||| |||||||||||||| |||||| |||||||||| ||||    
T  34114858 tctctttagtaccgtttcttgttcatctatgaaccaatcaacccattgaatcagaaaagaagag 34114921  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 48351739 - 48351822
Alignment:
Q  32 ttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagatgatccaaat 115  Q
    ||||||||| ||||  || ||||||||||||| ||| | ||||| ||||||| |||||||||||| | |||||| |||| ||||    
T  48351739 ttttttgtttattttcgagccaatcaaccattagattataaaagaagaggggactgcacaaaaaaggtaggagacgatctaaat 48351822  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 1292288 - 1292228
Alignment:
Q  11 ttttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcaga 71  Q
    |||||||| ||||| ||| || ||||||||||||||||| |||||||||||||||||||||    
T  1292288 ttttctctgtctttggtgttgatttttgttcatttatgagccaatcaaccattggatcaga 1292228  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 1294847 - 1294763
Alignment:
Q  11 ttttctctctctttagtgctgttttttgttcatttatgaaccaatcaaccattggatcagaaaaggagagggggctgcacaaaaaa 96  Q
    |||||||| ||||| ||| ||| | ||||||||| ||||  |||||||||||||||||||||||||| |||||| |||| ||||||    
T  1294847 ttttctctttctttggtgttgtgtattgttcatt-atgagtcaatcaaccattggatcagaaaaggaaagggggttgcataaaaaa 1294763  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 34387504 - 34387435
Alignment:
Q  11 ttttctctctctttagtgctgtttttt-gttcatttatgaaccaatcaaccattggatcagaaaaggaga 79  Q
    |||||||||||||  ||| |||||||| |||||  |||||  |||||||||||||||||||| |||||||    
T  34387504 ttttctctctcttaggtgttgtttttttgttcaactatgagtcaatcaaccattggatcagagaaggaga 34387435  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 34974881 - 34974926
Alignment:
Q  16 tctctctttagtgctgtttt-ttgttcatttatgaaccaatcaacc 60  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||    
T  34974881 tctctctttcgtgctgtttttttgttcatttatgagccaatcaacc 34974926  T

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