View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_18 (Length: 239)

Name: NF10124_low_18
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_18
NF10124_low_18
[»] chr6 (1 HSPs)
chr6 (1-221)||(34567699-34567919)
[»] chr8 (2 HSPs)
chr8 (9-221)||(42790114-42790326)
chr8 (9-221)||(42799654-42799866)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34567919 - 34567699
Alignment:
Q  1 tggttcaagttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34567919 tggttcaagttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaat 34567820  T
Q  101 aaagcaaaatttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttac 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34567819 aaagcaaaatttgattatgaaagaatcgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttac 34567720  T
Q  201 ttgttccaacaccatactatc 221  Q
    |||||||||||||||||||||    
T  34567719 ttgttccaacaccatactatc 34567699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 42790326 - 42790114
Alignment:
Q  9 gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa 108  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| |||||   |||||| |     
T  42790326 gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac 42790227  T
Q  109 atttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttacttgttcca 208  Q
    ||||||||  |||||||| ||| ||||||| || || ||||| || |||||||| || || |||||||||||||| || ||||||||||| ||||||||     
T  42790226 atttgattcggaaagaatagtcatcactgccggagcaactgcggctaatgagcttttaaccttcattcttgcaaaccccggagatgctttgcttgttccc 42790127  T
Q  209 acaccatactatc 221  Q
    || || |||||||    
T  42790126 accccttactatc 42790114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 42799866 - 42799654
Alignment:
Q  9 gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagaggaaataaagcaaa 108  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| |||||   |||||| |     
T  42799866 gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagaggtggtaaagctac 42799767  T
Q  109 atttgattatgaaagaattgtcctcactgctggtgctactgctgccaatgagctcttgactttcattcttgcaaatccaggagatgctttacttgttcca 208  Q
    ||||||||  |||||||| ||| ||||||| || || ||||| || |||||||| || || |||||||||||||| || ||||||||||| ||||||||     
T  42799766 atttgattcggaaagaatagtcatcactgccggagcaactgcggctaatgagcttttaaccttcattcttgcaaaccccggagatgctttgcttgttccc 42799667  T
Q  209 acaccatactatc 221  Q
    || || |||||||    
T  42799666 accccttactatc 42799654  T

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