View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_19 (Length: 227)

Name: NF10124_low_19
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_19
NF10124_low_19
[»] chr4 (10 HSPs)
chr4 (1-223)||(27292987-27293209)
chr4 (5-221)||(4919059-4919275)
chr4 (1-203)||(42976372-42976573)
chr4 (111-178)||(45989609-45989676)
chr4 (101-178)||(20133410-20133487)
chr4 (111-203)||(42069020-42069112)
chr4 (101-203)||(55919361-55919463)
chr4 (111-178)||(47031458-47031525)
chr4 (101-172)||(15531216-15531287)
chr4 (101-203)||(28679508-28679610)
[»] chr3 (11 HSPs)
chr3 (1-223)||(50650346-50650568)
chr3 (14-221)||(12938455-12938662)
chr3 (1-203)||(31658794-31658995)
chr3 (12-175)||(33216657-33216820)
chr3 (14-168)||(29833329-29833483)
chr3 (101-178)||(39833230-39833307)
chr3 (101-172)||(29703541-29703612)
chr3 (101-172)||(36950163-36950234)
chr3 (101-199)||(5232946-5233044)
chr3 (101-199)||(20104322-20104420)
chr3 (101-172)||(53282294-53282365)
[»] chr7 (8 HSPs)
chr7 (1-223)||(19436713-19436935)
chr7 (1-223)||(29833899-29834121)
chr7 (101-203)||(45972423-45972525)
chr7 (111-178)||(6442636-6442703)
chr7 (112-178)||(34094118-34094184)
chr7 (13-129)||(29258440-29258556)
chr7 (101-178)||(29243380-29243455)
chr7 (101-199)||(47327942-47328040)
[»] chr6 (4 HSPs)
chr6 (1-223)||(12938683-12938905)
chr6 (54-223)||(33694874-33695043)
chr6 (1-178)||(28138039-28138215)
chr6 (71-135)||(14532051-14532115)
[»] chr1 (6 HSPs)
chr1 (1-223)||(27286205-27286427)
chr1 (1-223)||(52385768-52385990)
chr1 (15-178)||(39241614-39241773)
chr1 (101-203)||(12981521-12981623)
chr1 (101-203)||(45348242-45348344)
chr1 (111-177)||(45325635-45325701)
[»] chr5 (7 HSPs)
chr5 (1-223)||(30624905-30625127)
chr5 (14-221)||(41413399-41413606)
chr5 (14-221)||(1828466-1828673)
chr5 (14-221)||(40313931-40314138)
chr5 (12-175)||(31482071-31482234)
chr5 (101-203)||(24788298-24788400)
chr5 (101-168)||(39884696-39884763)
[»] chr2 (10 HSPs)
chr2 (1-221)||(14096297-14096517)
chr2 (88-203)||(18977085-18977200)
chr2 (101-203)||(14810089-14810191)
chr2 (101-203)||(15330735-15330837)
chr2 (101-203)||(37261671-37261773)
chr2 (101-203)||(16429864-16429966)
chr2 (101-203)||(17690604-17690706)
chr2 (101-199)||(37078947-37079045)
chr2 (101-154)||(7089225-7089278)
chr2 (101-172)||(33755075-33755146)
[»] chr8 (6 HSPs)
chr8 (14-175)||(13802682-13802843)
chr8 (51-175)||(23613574-23613699)
chr8 (109-175)||(23614272-23614338)
chr8 (101-203)||(531684-531786)
chr8 (101-178)||(30945452-30945527)
chr8 (101-172)||(3879472-3879543)
[»] scaffold0166 (1 HSPs)
scaffold0166 (101-203)||(30681-30783)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27292987 - 27293209
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27292987 tcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaag 27293086  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293087 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 27293186  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  27293187 tttatcactcattcatctctctc 27293209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 4919059 - 4919275
Alignment:
Q  5 ttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagttta 104  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaagttta 4919158  T
Q  105 tttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctctttg 204  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||     
T  4919159 tttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttcttatttttccaattctatttcctcttta 4919258  T
Q  205 tcactcattcatctctc 221  Q
    |||||||||||||||||    
T  4919259 tcactcattcatctctc 4919275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 42976372 - 42976573
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||| ||||||||||||||||  ||||||| ||| |||| |  | ||||| |||||||||||||||||| |||| || ||||||||||||||    
T  42976372 tcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtaga-ataaattttaatatggatcacttgctccataagtcccaccatagacaag 42976470  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||| ||| | |||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||||| |  |  ||||||||| |||||    
T  42976471 tttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatcaattctctctcctc 42976570  T
Q  201 ttt 203  Q
    |||    
T  42976571 ttt 42976573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 45989676 - 45989609
Alignment:
Q  111 gatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  45989676 gatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttctt 45989609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 20133410 - 20133487
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttctt 20133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 42069112 - 42069020
Alignment:
Q  111 gatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctcttt 203  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| ||| ||||||||||||||||||| |  || ||||||| | ||||||||    
T  42069112 gatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttctaatttcaattctttctcctcttt 42069020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 55919463 - 55919361
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| ||||  |||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 55919364  T
Q  201 ttt 203  Q
    |||    
T  55919363 ttt 55919361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 47031525 - 47031458
Alignment:
Q  111 gatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    |||||||| ||||||||||  ||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  47031525 gatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttctt 47031458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 15531287 - 15531216
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    ||||||||| |||||||| ||||||||||  || |||||||||||||||||||| ||  |||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 15531216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 28679508 - 28679610
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||| | ||||||||  |||| ||||  ||| ||||||||||||||||||| ||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcctc 28679607  T
Q  201 ttt 203  Q
    |||    
T  28679608 ttt 28679610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 50650568 - 50650346
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  50650568 tcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaag 50650469  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650468 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 50650369  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  50650368 tttatcactcattcatctctctc 50650346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 12938455 - 12938662
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  12938455 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 12938554  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctctttgtcactcatt 213  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||| |||||||| ||||||||     
T  12938555 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatg 12938654  T
Q  214 catctctc 221  Q
    ||||||||    
T  12938655 catctctc 12938662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31658995 - 31658794
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||| ||||||||||||||||  ||||||||||| |||| || | ||||| |||||||||||||||||| |||| || ||||||||||||||    
T  31658995 tcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtagg-ataaattctaatatggatcacttgctccataagtcccaccatagacaag 31658897  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||| ||| | |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |  |  ||||||||| |||||    
T  31658896 tttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatcaattctctctcctc 31658797  T
Q  201 ttt 203  Q
    |||    
T  31658796 ttt 31658794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 33216820 - 33216657
Alignment:
Q  12 agccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaag 111  Q
    |||||||||||||| |||  ||||||| || || ||   ||||||||||||||||||||||||||| ||||||||||||||||||||  |||| |||| |    
T  33216820 agccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatg 33216721  T
Q  112 atcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgattttt 175  Q
    ||||||| |||||||||||||||| ||||||| |||| ||||||| | ||||| ||| ||||||    
T  33216720 atcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 29833329 - 29833483
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    |||||||||||| |||  ||||||| ||| | ||  |||||||||||||||||||||||||||| ||||||||||||||||||||  |||| || | |||    
T  29833329 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 29833428  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacat 168  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||| ||| |||||    
T  29833429 cttaatggttagatttgtttggtttctatggtattatggtacaccatcttcacat 29833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 39833307 - 39833230
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttctt 39833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 29703612 - 29703541
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    ||||||||| |||||||| ||||||||||  || |||||||||||||||||||| ||  |||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 29703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||| |   |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 5232946 - 5233044
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcct 199  Q
    ||||||||| ||||||||  |||||||||  ||| ||| ||||||||||||||||| | ||||||||||| ||||||| |  | |||||||||| ||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcct 5233044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 20104322 - 20104420
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcct 199  Q
    ||||||||| |||||||| ||||||||||  ||| ||| ||||||||||||||||| | ||||||||| | ||||||| |  | |||||||||| ||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcct 20104420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 53282294 - 53282365
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    |||||||||  ||||||| ||||||||||  || |||||||||||||||||||| ||  |||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacatgatt 53282365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19436713 - 19436935
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  19436713 tcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaag 19436812  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19436813 tttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttcttatttttccaattctctttcctc 19436912  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  19436913 tttatcactcattcatctctctc 19436935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29834121 - 29833899
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  29834121 tcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttcatatgttccaccatagacaag 29834022  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  29834021 tttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgattttacttatttttccaattctctttcctc 29833922  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  29833921 tttatcactcattcatctctctc 29833899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 45972423 - 45972525
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 45972522  T
Q  201 ttt 203  Q
    |||    
T  45972523 ttt 45972525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 6442636 - 6442703
Alignment:
Q  111 gatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6442636 gatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttctt 6442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 34094118 - 34094184
Alignment:
Q  112 atcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||||||||||||  ||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttctt 34094184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 29258440 - 29258556
Alignment:
Q  13 gccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaga 112  Q
    |||||||||||||||||  ||||||| ||| ||  ||| ||||||| ||| |||||||||||||| ||| ||||||||| | |||||||||||||||  |    
T  29258440 gccaatcagatttcaagtgatgacacgtcagataatgg-acaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataa 29258538  T
Q  113 tc-ttaacggttagattt 129  Q
    || |||||||||||||||    
T  29258539 tctttaacggttagattt 29258556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 29243380 - 29243455
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||  |||||||||||||| |||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttctt 29243455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 47327942 - 47328040
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcct 199  Q
    ||||||||| ||||||||  |||||||||  ||| ||| ||||||||||||||||| | ||||||||||| ||||||| |  | |||||||||| ||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcct 47328040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12938683 - 12938905
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||| |||||||||||| |||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12938683 tcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagacaag 12938782  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12938783 tttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 12938882  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  12938883 tttatcactcattcatctctctc 12938905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 33694874 - 33695043
Alignment:
Q  54 aaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggt 153  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||| ||||| |||||| ||||||||||    
T  33694874 aaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatcttaacagttagatttatttggcctctatattattgtggt 33694973  T
Q  154 acaccctctacacatgatttttcttatttttccaattctctttcctctttgtcactcattcatctctctc 223  Q
    |||||||||||| ||||||||||||||  ||||| |||||| || ||||| |||||||||||||||||||    
T  33694974 acaccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctctctc 33695043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 28138215 - 28138039
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||| |||||||| |||||||| ||| |||| || ||||||| ||||||||| |||||||| ||||||| ||| ||| ||||||    
T  28138215 tcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccatcatggacaag 28138117  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| |||||||| ||||||||||  ||||||||||| ||||||||||||  | |||||||||||||||||||    
T  28138116 tttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgatttttctt 28138039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 14532115 - 14532051
Alignment:
Q  71 acttgcttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttgg 135  Q
    |||||||  ||||||| |||||| |||| ||||| |||| |||||||| ||||||||||||||||    
T  14532115 acttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttgg 14532051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27286205 - 27286427
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  27286205 tcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttcatatgttccaccatagacaag 27286304  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27286305 tttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 27286404  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||| ||||    
T  27286405 tttatcactcattcatctatctc 27286427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52385990 - 52385768
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||    
T  52385990 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttcatatgttccaccatagacaag 52385891  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52385890 tttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttcttacttttccaattctctttcctc 52385791  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||| ||||||||||||||    
T  52385790 tttatcacccattcatctctctc 52385768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 39241614 - 39241773
Alignment:
Q  15 caatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagatc 114  Q
    ||||||||||| |||  || |||| ||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  39241614 caatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatc 39241712  T
Q  115 ttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    |||||||||||||||   ||   ||| ||||||||||||||||| |||||||||||||||||||    
T  39241713 ttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttctt 39241773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 12981521 - 12981623
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 12981620  T
Q  201 ttt 203  Q
    |||    
T  12981621 ttt 12981623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 45348344 - 45348242
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 45348245  T
Q  201 ttt 203  Q
    |||    
T  45348244 ttt 45348242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 45325701 - 45325635
Alignment:
Q  111 gatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttct 177  Q
    |||||||||||||||||||  || |||||||||||||||||||| ||| ||||||||||||||||||    
T  45325701 gatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30624905 - 30625127
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    |||||||||||| |||||||||||||||| |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30624905 tcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttcatatgttccaccatagacaag 30625004  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30625005 tttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 30625104  T
Q  201 tttgtcactcattcatctctctc 223  Q
    ||| |||||||||||||||||||    
T  30625105 tttatcactcattcatctctctc 30625127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 41413606 - 41413399
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  41413606 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 41413507  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctctttgtcactcatt 213  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||| ||||||||     
T  41413506 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctttcctctttatcactcatg 41413407  T
Q  214 catctctc 221  Q
    ||||||||    
T  41413406 catctctc 41413399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 1828466 - 1828673
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    ||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  1828466 ccaatcagatttcaagccatgacacgtcagatgttatgacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 1828565  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctctttgtcactcatt 213  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||| |||||||| ||||||||     
T  1828566 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatg 1828665  T
Q  214 catctctc 221  Q
    ||||||||    
T  1828666 catctctc 1828673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 40313931 - 40314138
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  40313931 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 40314030  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctctttgtcactcatt 213  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||| |||||||| ||||||||     
T  40314031 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatg 40314130  T
Q  214 catctctc 221  Q
    ||||||||    
T  40314131 catctctc 40314138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 31482234 - 31482071
Alignment:
Q  12 agccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaag 111  Q
    ||||||||| |||| |||  ||||||| ||| | ||  |||||||||||||||||||||||||||| ||||||||||||||||||||  |||| |||| |    
T  31482234 agccaatcaaattttaagtgatgacacttcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatg 31482135  T
Q  112 atcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgattttt 175  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||    
T  31482134 atcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 24788400 - 24788298
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||| | ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 24788301  T
Q  201 ttt 203  Q
    |||    
T  24788300 ttt 24788298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 39884696 - 39884763
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacat 168  Q
    ||||||||| |||||||| ||||||||||  || |||||||||||||||||||| ||  |||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatactgtctacacat 39884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14096297 - 14096517
Alignment:
Q  1 tcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaag 100  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  14096297 tcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaag 14096396  T
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  14096397 tttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttcttatttttccaattctatttcctc 14096496  T
Q  201 tttgtcactcattcatctctc 221  Q
    ||| |||||||||||||||||    
T  14096497 tttatcactcattcatctctc 14096517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 18977200 - 18977085
Alignment:
Q  88 caccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttcca 187  Q
    |||||| ||||||||||||||| ||||||||| |||||||||  || |||||||||||||||||||||||| ||||||||| | ||||||| |  | |||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  188 attctctttcctcttt 203  Q
    ||| ||| ||||||||    
T  18977100 attatctctcctcttt 18977085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 14810191 - 14810089
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 14810092  T
Q  201 ttt 203  Q
    |||    
T  14810091 ttt 14810089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 15330735 - 15330837
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 15330834  T
Q  201 ttt 203  Q
    |||    
T  15330835 ttt 15330837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 37261773 - 37261671
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 37261674  T
Q  201 ttt 203  Q
    |||    
T  37261673 ttt 37261671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 16429864 - 16429966
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||| ||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 16429963  T
Q  201 ttt 203  Q
    |||    
T  16429964 ttt 16429966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 17690604 - 17690706
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||| | ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 17690703  T
Q  201 ttt 203  Q
    |||    
T  17690704 ttt 17690706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 37078947 - 37079045
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcct 199  Q
    ||||||||| ||||||||  |||||||||  ||| ||| ||||||||||||||||| | ||||||||||| ||||||| |  | |||||||||| ||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcct 37079045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggta 154  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||||||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    ||||||||| ||| |||| ||||||||||  ||||||| ||||||||||||||| |   |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 13802843 - 13802682
Alignment:
Q  14 ccaatcagatttcaagccatgacacatcatatgttgggacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagat 113  Q
    |||||||||||| |||  ||||||| ||| | ||  |||||||||||||||||||||||||||| ||||||||||||||||||||  |||| || | |||    
T  13802843 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 13802744  T
Q  114 cttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgattttt 175  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||| ||||||||| ||||||    
T  13802743 cttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 23613574 - 23613699
Alignment:
Q  51 gacaaattataatatggatcacttgcttcatatgttccaccatagacaagtttatttc-aagatcttaacggttagatttgtttggtctctatgttattg 149  Q
    |||||||| ||||||||| ||||||||  |||||||||||||| || || ||| |||  ||||||||||||||||||||||||||||||| ||| |||||    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  150 tggtacaccctctacacatgattttt 175  Q
    ||||||| ||||||||||||||||||    
T  23613674 tggtacagcctctacacatgattttt 23613699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 23614272 - 23614338
Alignment:
Q  109 aagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgattttt 175  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||    
T  23614272 aagatcttaacggttagatttgtttggtctccataatattgtggcacaccctctacacatgattttt 23614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 531684 - 531786
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    |||||||||  || |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 531783  T
Q  201 ttt 203  Q
    |||    
T  531784 ttt 531786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 30945527 - 30945452
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 178  Q
    ||||||||| |||||||| ||||||||||  ||| |||||||  |||||||||||||| |||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttctt 30945452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatt 172  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||| |   |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 30783 - 30681
Alignment:
Q  101 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttcttatttttccaattctctttcctc 200  Q
    ||||||| | ||| |||| ||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||| |  | |||||| ||| |||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcctc 30684  T
Q  201 ttt 203  Q
    |||    
T  30683 ttt 30681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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