View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_3 (Length: 467)

Name: NF10124_low_3
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_3
NF10124_low_3
[»] chr4 (2 HSPs)
chr4 (18-458)||(39079311-39079749)
chr4 (19-94)||(43381924-43381999)
[»] chr2 (2 HSPs)
chr2 (25-118)||(37490922-37491015)
chr2 (69-118)||(8295131-8295180)
[»] chr5 (1 HSPs)
chr5 (19-118)||(23270082-23270181)
[»] chr7 (1 HSPs)
chr7 (19-118)||(5460935-5461034)
[»] chr3 (4 HSPs)
chr3 (21-87)||(9738618-9738684)
chr3 (18-116)||(35528988-35529085)
chr3 (66-118)||(21330778-21330830)
chr3 (45-94)||(46107369-46107418)
[»] chr8 (2 HSPs)
chr8 (72-117)||(38078261-38078306)
chr8 (24-118)||(29468318-29468412)
[»] chr1 (1 HSPs)
chr1 (19-90)||(4631110-4631181)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 39079749 - 39079311
Alignment:
Q  18 tatatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaag 117  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  39079749 tatatgatcatgaatttgaaaactagcataagataatgactttctagctaacaaatgaacgacattatttatttttcgtgtaataaaacttatcttaaag 39079650  T
Q  118 tcaccgaggaaaaacaatctttttcttaagttcatgttgaactatataggctaaaagaaaaggcttgccagctctcgaataacttcaaccataacaaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  39079649 tcaccgaggaaaaacaatctttttcttaagttcatgttgaactatataggctaaaagaaaa-gctggccagctctcgaataacttcaaccataacaaaca 39079551  T
Q  218 ttttgtgtattatgtgagtggttctacaccatgaatctgacacctttgatgtataaatgtcgaggtagcttaactggttttagttaaaagaaaaaggagt 317  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  39079550 ttttgtgtattatgtgagtggttctacaccattaatctgacacctttgatgtataaatgtcgaggtagcttaattggttttagtt-aaagaaaaaggagt 39079452  T
Q  318 tggaggtcatcgattaaaacacagatggagaagtaaatattagtctaacaataaactactccattcgatcatatttataaacaagtaatttttattcttt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  39079451 tggaggtcatcgattaaaacacagatggagaagtaaatattagtctaacaataaactacttcattcgatcatatttataagcaagtattttttattcttt 39079352  T
Q  418 tttaagtttgttgaacatcttatggaggtccggccctatgc 458  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  39079351 tttaagtttgttcaacatcttatgcaggtccggccgtatgc 39079311  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 43381999 - 43381924
Alignment:
Q  19 atatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtc 94  Q
    |||||||||||||| || ||| ||| ||||||||||||| | || | |||||||||| ||||| ||||| ||||||    
T  43381999 atatgatcatgaatgtggaaactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtc 43381924  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 37491015 - 37490922
Alignment:
Q  25 tcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    ||||||| ||||||||||| || |||||||||| | ||||||||||| || ||||||||||||| ||||| | |||| |||||||||| |||||    
T  37491015 tcatgaacttgaaaattagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagt 37490922  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 8295180 - 8295131
Alignment:
Q  69 caaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    ||||||| ||||| ||||||||||||   |||||||||||||||||||||    
T  8295180 caaatgagcaacactatttatttgtctcttaataaaacttatcttaaagt 8295131  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 23270181 - 23270082
Alignment:
Q  19 atatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    |||| |||||||| |||  || ||| ||||||||||||||  ||||||||||| ||| |||||||||||  ||||| | |||| ||||||||||||||||    
T  23270181 atataatcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagt 23270082  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 5461034 - 5460935
Alignment:
Q  19 atatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    ||||||||||||||||||  | ||| ||||||||||||  ||||||||||||| | | ||||| |||||  |||||   |||| ||||||||||||||||    
T  5461034 atatgatcatgaatttgaggactagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaaacttatcttaaagt 5460935  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 9738618 - 9738684
Alignment:
Q  21 atgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattattt 87  Q
    ||||| |||||||||| || ||  |||||||||||||  |||||||||||||||| |||||||||||    
T  9738618 atgatgatgaatttgagaactaacataagataatgacgctctagctaacaaatgagcaacattattt 9738684  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 35528988 - 35529085
Alignment:
Q  18 tatatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaa 116  Q
    |||||| ||||||||||  ||| ||  ||||||||||||| ||||||||||| ||||| |||||| |||| |||||||  |||| |||||||| |||||    
T  35528988 tatatggtcatgaatttagaaactaacataagataatgacattctagctaac-aatgagcaacatcatttgtttgtcgcttaatgaaacttattttaaa 35529085  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 21330778 - 21330830
Alignment:
Q  66 taacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    |||||||||| ||||||||||||||||||    ||||||||||||||||||||    
T  21330778 taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagt 21330830  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 46107418 - 46107369
Alignment:
Q  45 ataagataatgactttctagctaacaaatgaacaacattatttatttgtc 94  Q
    |||| ||||||||  |||||||||||||||| |||||||||||| |||||    
T  46107418 ataatataatgacgctctagctaacaaatgagcaacattatttacttgtc 46107369  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 38078261 - 38078306
Alignment:
Q  72 atgaacaacattatttatttgtcgtgtaataaaacttatcttaaag 117  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||    
T  38078261 atgaacaacattgtttgtttgtcgtctaataaaacttatcttaaag 38078306  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 29468318 - 29468412
Alignment:
Q  24 atcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatttgtcgtgtaataaaacttatcttaaagt 118  Q
    |||||||| |||| || ||| |||| |||||||| | ||||||||||| |   ||||||||||| ||||||   |||| ||||||||||||||||    
T  29468318 atcatgaacttgagaactagcataacataatgacatcctagctaacaagtatgcaacattatttgtttgtctcataatgaaacttatcttaaagt 29468412  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4631110 - 4631181
Alignment:
Q  19 atatgatcatgaatttgaaaattagtataagataatgactttctagctaacaaatgaacaacattatttatt 90  Q
    |||||||||||| ||| |||| ||  ||||||||| |||  |||| ||||||||| ||||||||||||||||    
T  4631110 atatgatcatgagtttaaaaactaacataagataaggacactctaactaacaaataaacaacattatttatt 4631181  T

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