View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_low_4 (Length: 457)
Name: NF10124_low_4
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31524872 - 31524673
Alignment:
| Q |
1 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31524872 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcgtatgg |
31524773 |
T |
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| Q |
101 |
ttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgctcgtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
31524772 |
ttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacaatctacctagaagtcagacgcccgtctg |
31524673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 31524578 - 31524430
Alignment:
| Q |
297 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
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| Q |
397 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524478 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
31524430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26627891 - 26627855
Alignment:
| Q |
6 |
gattgatgagtgtggaaacaagtggaattgtatcact |
42 |
Q |
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| T |
26627891 |
gattgatgaatgtggaaacaagtggaattgtatcact |
26627855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 33366629 - 33366821
Alignment:
| Q |
1 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
33366629 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccgcatcaaaattggagggggttggaagcgtatgg |
33366728 |
T |
|
| Q |
101 |
ttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
193 |
Q |
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| T |
33366729 |
ttgaagcacgtaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacactctacctagaagtcagacgc |
33366821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 33366922 - 33367070
Alignment:
| Q |
297 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
|
| Q |
397 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367022 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
33367070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 49194829 - 49194637
Alignment:
| Q |
1 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
49194829 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgcctcatcaaaattggagggggttggaagcgtatgt |
49194730 |
T |
|
| Q |
101 |
ttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
193 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
49194729 |
ttgaagcacgtaacataccaataggtgtaagtaacgaagttcggtgctccaagggttgggaacaatgatacattctacctagaagtcagacgc |
49194637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 49194536 - 49194388
Alignment:
| Q |
297 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
|
| Q |
397 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194436 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
49194388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 39334610 - 39334573
Alignment:
| Q |
5 |
tgattgatgagtgtggaaacaagtggaattgtatcact |
42 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
39334610 |
tgattgatgactgtggaaacaagtggaattgtatcact |
39334573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 42934153 - 42934027
Alignment:
| Q |
1 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
42934153 |
gtgttgattgatgactgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaattggtgggggttggaagcgtatgc |
42934054 |
T |
|
| Q |
101 |
ttgaagcacgcaacataccaataggtg |
127 |
Q |
| |
|
||||||| | |||||| |||||||||| |
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|
| T |
42934053 |
ttgaagcgctcaacattccaataggtg |
42934027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41437036 - 41437162
Alignment:
| Q |
1 |
gtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| ||||||| ||||||||||||| |||| |
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| T |
41437036 |
gtgttgattgatgactgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaattgacgggggttggaagcgtatgc |
41437135 |
T |
|
| Q |
101 |
ttgaagcacgcaacataccaataggtg |
127 |
Q |
| |
|
||||||| |||||||| ||||||||| |
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|
| T |
41437136 |
ttgaagcgcgcaacatttcaataggtg |
41437162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 28503467 - 28503430
Alignment:
| Q |
5 |
tgattgatgagtgtggaaacaagtggaattgtatcact |
42 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28503467 |
tgattgatgactgtggaaacaagtggaattgtatcact |
28503430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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