View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_5 (Length: 434)

Name: NF10124_low_5
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_5
NF10124_low_5
[»] chr4 (1 HSPs)
chr4 (19-425)||(2090223-2090629)
[»] chr3 (3 HSPs)
chr3 (19-189)||(2878944-2879114)
chr3 (345-386)||(2727332-2727373)
chr3 (324-384)||(2878749-2878809)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 2090223 - 2090629
Alignment:
Q  19 catatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2090223 catataccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg 2090322  T
Q  119 gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgtctataatatttcttgaactgacattgcaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2090323 gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgtctataatatttcttgaacttacattgcaa 2090422  T
Q  219 cacatcactaatgagcaccaattaaaaaattgttctaggccataaaatgggtgaggggaaaggtgaggaaacaccaaaggttgtaatggatactcctttg 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2090423 cacatcactaatgagcaccaattaaaaaattgttgtaggccataaaatgggtgaggggaaaggtgaggaaacaccaaaggttgtaatggatactcctttg 2090522  T
Q  319 gaagtgttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaag 418  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2090523 gaagtgttgtggttaggatgcgattacgccatgagtgcgagacacacatagcctttgattgatccttcatagatagcccaccaaagatttttgtttgaag 2090622  T
Q  419 ctctgtg 425  Q
    |||||||    
T  2090623 ctctgtg 2090629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 2879114 - 2878944
Alignment:
Q  19 catatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtg 118  Q
    ||||||||||||||||||||||||  || ||| |   ||||||    ||||||| || || ||||||||||||| | |  ||||||| ||||||||| |     
T  2879114 catatgccagagcagcatatgaatacccaccagaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaata 2879015  T
Q  119 gtagacaccacgcacaatattcctagcttgaccatccttatggcaaaacaagaataacccattgcatgtgt 189  Q
     |||||||||||||  || ||  |||| | |||||| || ||||||||||| | ||| |||||||||||||    
T  2879014 atagacaccacgcaagatgttggtagcctcaccatcattgtggcaaaacaatagtaagccattgcatgtgt 2878944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 2727332 - 2727373
Alignment:
Q  345 cgccatgagtgcgagacacacatagcctttgattgatccttc 386  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  2727332 cgccatgagtgtgagacacacatagcttttgattgatccttc 2727373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 2878809 - 2878749
Alignment:
Q  324 gttgtgattagaatgcgattacgccatgagtgcgagacacacatagcctttgattgatcct 384  Q
    |||||| |||||| | |||||||||||   | ||||||||||||||| |||||||||||||    
T  2878809 gttgtgtttagaacgtgattacgccattcattcgagacacacatagcttttgattgatcct 2878749  T

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