View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_low_6 (Length: 433)
Name: NF10124_low_6
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 14469963 - 14469592
Alignment:
| Q |
29 |
acatggttaagtaccgactttgctttttcttggattctacgaaaacacgtttggtgtagcaagtatctaaggaaatcaatgtgatcatcaagagcggcag |
128 |
Q |
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| T |
14469963 |
acatggttaagtaccgactttgctttttcttggattctacggaaacatgtttggtgtagcaagcatttaaggagatcaatgtcatcatcaagggaggaag |
14469864 |
T |
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| Q |
129 |
aa-ccgtcgtagcgcttaacacttatcagcatctggagttcctttggtacatgataatcatttattttgctcgtaaaaacattctttaccgcctggtcaa |
227 |
Q |
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| T |
14469863 |
aaaccgtcgtagcgcttaacactaagcagcatctggagttccgttggtacatgataatcatttatttttctcgtaaaaaaattctttacc--caggtcaa |
14469766 |
T |
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| Q |
228 |
atatttactgctcat--tatccaaggattcttggattgttgattttggtcctagttcacaacttcacatatggcattcctcaattatttcttgtatctca |
325 |
Q |
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| T |
14469765 |
ccatttactgttcataatatccatggattcttggattgttgattttggttctagttcacaacttcacatatgacattcctcaactatttctagtatctca |
14469666 |
T |
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| Q |
326 |
agatgtttctaatagatttcaagcatcattctttatctttgggtgcttaaagtctcctgtctcacattatttcg |
399 |
Q |
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| T |
14469665 |
agatgtttctaatagatttcaggcatcattctttatctttgggtgcttaaagtctactgtctcacattatttcg |
14469592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 14484787 - 14484715
Alignment:
| Q |
350 |
atcattctttatctttgggtgcttaaagtctcctgtctcacattatttcgatccattatcacattatttctct |
422 |
Q |
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| T |
14484787 |
atcattctttatctttggatgcttaaagtctcttgtctcacattattttgatctcttatcacattatttctct |
14484715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 14484936 - 14484896
Alignment:
| Q |
304 |
ctcaattatttcttgtatctcaagatgtttctaatagattt |
344 |
Q |
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| T |
14484936 |
ctcaattatttctactatctcaaaatgtttctaatagattt |
14484896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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