View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10124_low_7 (Length: 426)

Name: NF10124_low_7
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10124_low_7
NF10124_low_7
[»] chr3 (2 HSPs)
chr3 (19-420)||(11527706-11528108)
chr3 (19-413)||(39712084-39712490)
[»] chr1 (2 HSPs)
chr1 (165-413)||(13228580-13228834)
chr1 (165-413)||(40768104-40768358)
[»] chr2 (5 HSPs)
chr2 (165-413)||(28166153-28166407)
chr2 (190-413)||(44905022-44905252)
chr2 (19-376)||(37952803-37953160)
chr2 (103-362)||(37958555-37958820)
chr2 (96-362)||(37896375-37896647)
[»] chr7 (1 HSPs)
chr7 (190-413)||(38757159-38757388)
[»] chr4 (2 HSPs)
chr4 (165-413)||(11149325-11149583)
chr4 (165-413)||(34538616-34538870)
[»] chr5 (1 HSPs)
chr5 (165-361)||(6535313-6535514)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 11527706 - 11528108
Alignment:
Q  19 tcaattaccttaacgacatcaacaaaactattttctcctttcatatcctttctcttcattgttgcacttttagacactaaacagttcccaaaatacccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11527706 tcaattaccttaacgacatcaacaaaactattttctcctttcatatcctttctcttcattgttgcacttttagacactaaacagttcccaaaatacccct 11527805  T
Q  119 ctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  11527806 ctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatctttatcgtcgccatcatcatcgtttctatgtattgttttagt 11527905  T
Q  219 tatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttatcatttttcttccattgattcaccacaga- 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |     
T  11527906 tatactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgttatcatttttcttccattgattcagcacatat 11528005  T
Q  318 ttttttcatcccctcaatttcttcttttccaaaagcaataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtctctgc 417  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11528006 ttttttcatcctctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtctatgc 11528105  T
Q  418 ttc 420  Q
    |||    
T  11528106 ttc 11528108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 39712084 - 39712490
Alignment:
Q  19 tcaattaccttaacgacatcaacaaaactattttctcctttcatatcctttctcttcattgttgcacttttagacactaaacagttcccaaaatacccct 118  Q
    |||||||||||||| |||||||||||||||| |  ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  39712084 tcaattaccttaacaacatcaacaaaactatctattcccttcatatcctttctcttcatggttgcacttttagacactacacagttcccaaaatacccct 39712183  T
Q  119 ctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatctt---------catcgtcgccatcatcatcgtttctatgtat 209  Q
    |||||||||  || |||||||||||||||||||||||||||||| |||| || |||||||         |||| || ||| ||||||| ||| |||| ||    
T  39712184 ctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaagtactcatctttttcatcatcatcatcaccaccatcatcatttttatgcat 39712283  T
Q  210 tgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttat---catttttcttccattga 306  Q
    || || ||  |||||||||||||| |||||| | ||||||||||||||||||| ||||| |||| | |||||||| ||||   |||||||||||||||||    
T  39712284 tgcttcaaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgttgatttcattattatcatttttcttccattga 39712383  T
Q  307 ttcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaa 406  Q
    |||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| |  |||||||||||| |||||    
T  39712384 ttcagcacccattttttcatcccctcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttgagcaa 39712483  T
Q  407 tgagtct 413  Q
    |||||||    
T  39712484 tgagtct 39712490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 165 - 413
Target Start/End: Complemental strand, 13228834 - 13228580
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagataga 264  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||    
T  13228834 aaaatattcatcttcatcatcgccatcatcatcgtatctatgtattgctttaaatatactagcccaaacgaaagcacaagttacgacaaatttagataga 13228735  T
Q  265 aattgtggcgcattgatttcgttat------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataa 358  Q
    ||||||||||| |||||||| ||||      |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||| ||||||    
T  13228734 aattgtggcgcgttgatttccttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttctaaaaacaataa 13228635  T
Q  359 ttgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtct 413  Q
    ||| |||||||||||||| ||||||||   || ||||| ||||||||||||||||    
T  13228634 ttgtcttaacaaaatcttcatgttctttggtgatttgagtttcagcaatgagtct 13228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 165 - 413
Target Start/End: Original strand, 40768104 - 40768358
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagataga 264  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  40768104 aaaatattcatcttcatcatcgccatcatcatcatatctatgtattgctttaactatactagcccaaacgaaatcacaagttacgacaaatttagataga 40768203  T
Q  265 aattgtggcgcattgatttcgttat------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataa 358  Q
    ||||||||| | |||||||| ||||      |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  40768204 aattgtggcacgttgatttccttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataa 40768303  T
Q  359 ttgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtct 413  Q
    |||||||||||||||||| ||||||||   || ||||| ||||| ||||||||||    
T  40768304 ttgccttaacaaaatcttcatgttctttggtgatttgagtttcaacaatgagtct 40768358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 165 - 413
Target Start/End: Original strand, 28166153 - 28166407
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagataga 264  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  28166153 aaaatattcatcttcatcatcgccatcatcatcgtatctatgtattgctttaactatactagaccaaacgaaagcacaagttacgacaaatttagttaga 28166252  T
Q  265 aattgtggcgcattgatttcgttat------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataa 358  Q
    ||||||||| | |||||||| ||||      |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  28166253 aattgtggcacgttgatttctttatcgttgccatttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataa 28166352  T
Q  359 ttgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtct 413  Q
    |||| |||| |||||||| ||||||||   || ||||| ||||||||||||||||    
T  28166353 ttgctttaataaaatcttcatgttctttggtggtttgagtttcagcaatgagtct 28166407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 190 - 413
Target Start/End: Original strand, 44905022 - 44905252
Alignment:
Q  190 tcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttat 289  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  44905022 tcatcatcgtatctatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttat 44905121  T
Q  290 ------catttttcttccattgattcaccacaga-ttttttcatcccctcaatttcttcttttccaaaagcaataattgccttaacaaaatcttgatgtt 382  Q
          |||||||||||||||||| ||  ||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  44905122 cgttgccatttttcttccattgatccattacatatttttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatgttcatgtt 44905221  T
Q  383 cttccttgctttgactttcagcaatgagtct 413  Q
    |||   || ||||| ||||||||||||||||    
T  44905222 ctttggtgatttgagtttcagcaatgagtct 44905252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 37953160 - 37952803
Alignment:
Q  19 tcaattaccttaacgacatcaacaaaactattttctcctttcatatcctttctcttcattgttgcacttttagacactaaacagttcccaaaatacccct 118  Q
    ||||||||||||||  |||  ||||||| || ||||||||||| |||  |||||||||| ||||||   ||| || |||||||||| || ||||||||||    
T  37953160 tcaattaccttaacagcattcacaaaaccatcttctcctttcacatctcttctcttcatcgttgcatgattaaacgctaaacagtttccgaaatacccct 37953061  T
Q  119 ctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaat 218  Q
    | |||||||  || || ||||| ||||||||||||| ||||||| ||||||| || ||||  || ||   || || ||   ||||||| |||| |||||     
T  37953060 ccggtattgtgtaccctagtctgtctctgcaatcacctgtgaaacaaaaatactcgtctttttcatcaatattatgattacttctatgcattgctttaac 37952961  T
Q  219 tatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttatcatttttcttccattgattcaccacagat 318  Q
     | |||| ||||||| |||||||| ||||||||| ||||||||||||||||||| || | |||||| | ||| ||||||||||||| |||||  ||  ||    
T  37952960 caaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttgatcttttttcttccattcattcaatacccat 37952861  T
Q  319 tttttcatcccctcaatttcttcttttccaaaagcaataattgccttaacaaaatctt 376  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||    
T  37952860 tttttcatcccctcgatttcttcttttccgaaaacaataattgccttaacacaatctt 37952803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 362
Target Start/End: Complemental strand, 37958820 - 37958555
Alignment:
Q  103 ttcccaaaatacccctctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatctt------catcgtcgccatcatcat 196  Q
    ||||||||||||||||||||||||   || |||||||| ||||| ||||||| ||  |||  |||||| || ||||      |||| |||  |||||  |    
T  37958820 ttcccaaaatacccctctggtattttgtacccaagtctttctctacaatcacctggaaaaccaaaatactcctctttttcatcatcatcgttatcatttt 37958721  T
Q  197 cgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttatcattttt 296  Q
    | ||||||  | |||||||||  ||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||| |  | |||   |||||||||    
T  37958720 cctttctacatcttgttttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgcttgaacttcacaatcattttt 37958621  T
Q  297 cttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataattgc 362  Q
    |||||||||||  |   |  || ||||||| | |||||||||||||||| ||||| ||||| ||||    
T  37958620 cttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgc 37958555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 362
Target Start/End: Original strand, 37896375 - 37896647
Alignment:
Q  96 taaacagttcccaaaatacccctctggtattggataaccaagtctatctctgcaatcacatgtgaaagaaaaatattcatctt---catcgtcgccatca 192  Q
    |||||| || |||||||||||||||||||||   || |||||||||||||| ||||||| ||  |||  |||||| || ||||   |||| ||  ||| |    
T  37896375 taaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcacctgcaaaacgaaaatactcttctttttcatcatcatcatta 37896474  T
Q  193 tcat---cgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttat 289  Q
    ||||   | ||||||| | |||||||||  | ||||| ||||| |||| |||| |||||||||||||||||||  ||||||||||| |  | ||| | ||    
T  37896475 tcattttcatttctatatcttgttttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgcttgaacttcatgat 37896574  T
Q  290 catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataattgc 362  Q
    ||||||||||||||||||| |   |  || ||||||| | ||||||||| |||||| ||||| ||||| ||||    
T  37896575 catttttcttccattgattaagtgcccatattttcattctctcaatttcctcttttgcaaaaacaatagttgc 37896647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 190 - 413
Target Start/End: Original strand, 38757159 - 38757388
Alignment:
Q  190 tcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatagaaattgtggcgcattgatttcgttat 289  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||| ||||    
T  38757159 tcatcatcgtatctatgtattgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttat 38757258  T
Q  290 ------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataattgccttaacaaaatcttgatgttc 383  Q
          |||||||||||||||||||||   || ||||||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||| ||||||    
T  38757259 cgttgccatttttcttccattgattcagtgcatattttttcatcccctcaatttcttctttttcaaaaacaataattgttttaacaaaatcttcatgttc 38757358  T
Q  384 ttccttgctttgactttcagcaatgagtct 413  Q
    ||   || ||||| ||||||||||||||||    
T  38757359 tttggtgatttgagtttcagcaatgagtct 38757388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 165 - 413
Target Start/End: Complemental strand, 11149583 - 11149325
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaattata----ctagcccaaacgaaagcacaggttacaacaaatttaga 260  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||  ||||| ||||    ||| ||||| |||||||||| ||||| ||||| | |||    
T  11149583 aaaatattcatcttcatcatcgtcatcatcatcgtatctatgtattactttaactatatatactaacccaagcgaaagcacaagttacgacaaaatgaga 11149484  T
Q  261 tagaaattgtggcgcattgatttcgttat------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagca 354  Q
    ||||||||||||| | |||||||| ||||      ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||    
T  11149483 tagaaattgtggcacgttgatttccttattgttgccatttttcttccattgattcagcacatattttttcatcccctcaatttcttcttttccaaaaaca 11149384  T
Q  355 ataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtct 413  Q
    |||||||||||||||||||||| ||||||||   || ||| | ||||||||||||||||    
T  11149383 ataattgccttaacaaaatcttcatgttctttggtgatttcagtttcagcaatgagtct 11149325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 165 - 413
Target Start/End: Original strand, 34538616 - 34538870
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatca-tcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagatag 263  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||||| ||||| |||||||||||||||||||||| | ||||  ||||||||| ||||    
T  34538616 aaaatattcatcttcatcatcgccatcatcaatcgtaactatgtattgctttaactatactagcccaaacgaaagcataagttatgacaaatttacatag 34538715  T
Q  264 aaattgtggcgcattgatttcgttatcat-----ttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataa 358  Q
    |||||||||||| |||||||| ||||| |     |||| || |||||||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  34538716 aaattgtggcgcgttgatttccttatcgttgccattttttttcattgattaagtacatattttttcatcccctcaatttcttcttttccaaaaacaataa 34538815  T
Q  359 ttgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtct 413  Q
    |||||||||||||||||| ||||||||   || ||||| |||||| |||||||||    
T  34538816 ttgccttaacaaaatcttcatgttctttggtgatttgagtttcagtaatgagtct 34538870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 165 - 361
Target Start/End: Original strand, 6535313 - 6535514
Alignment:
Q  165 aaaatattcatcttcatcgtcgccatcatcatcgtttctatgtattgttttaattatactagcccaaacgaaagcacaggttacaacaaatttagataga 264  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||  ||||  ||||||||||||||    
T  6535313 aaaatattcatcttcatcatcgccatcatcatcgtatctatgtattgctttaactatactagctcaaacgaaagcacaaattacggcaaatttagataga 6535412  T
Q  265 aattgtggcgcattgatttcgttat------catttttcttccattgattcaccacagattttttcatcccctcaatttcttcttttccaaaagcaataa 358  Q
    ||||||||||| |||||||  ||||      ||||||||||||||||||| |  ||| |||||||||||||| |||||||||||||||||||| ||||||    
T  6535413 aattgtggcgcgttgattttcttattgttgccatttttcttccattgattaagtacatattttttcatcccc-caatttcttcttttccaaaaacaataa 6535511  T
Q  359 ttg 361  Q
    |||    
T  6535512 ttg 6535514  T

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