View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_low_8 (Length: 408)
Name: NF10124_low_8
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 13898096 - 13897705
Alignment:
| Q |
1 |
cgagtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacctgtcttagaatcatcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898096 |
cgagtatcgagtttcattcgacaaattttaggaagttaacaattaagtcaatttttgagcttgtgaacaataggctcatacctgtcttagaatcatcatt |
13897997 |
T |
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| Q |
101 |
gaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgtttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897996 |
gaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgtttacaa |
13897897 |
T |
|
| Q |
201 |
cctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggtttgtgtatggaaggctatga |
300 |
Q |
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| T |
13897896 |
cctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggtttgtgtatggaaggctatga |
13897797 |
T |
|
| Q |
301 |
ggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggaaagaaagaaa |
392 |
Q |
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| T |
13897796 |
ggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaa |
13897705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 13887108 - 13887499
Alignment:
| Q |
1 |
cgagtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacctgtcttagaatcatcatt |
100 |
Q |
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||||||||||||||||||| ||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
13887108 |
cgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctcatacctgtcttagattcatcgtt |
13887207 |
T |
|
| Q |
101 |
gaagaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgtttacaa |
200 |
Q |
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||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
13887208 |
gaagaaatcggtttccatcgatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttgatgttgatccttcttgtttgcaa |
13887307 |
T |
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| Q |
201 |
cctcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggtttgtgtatggaaggctatga |
300 |
Q |
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| T |
13887308 |
cttcatttacctgaaataccttttgcaagagcttttgaagatgcaaccgaagcaactttgcttcgatttgtcgcgccagtttgtgtatggaaggctatga |
13887407 |
T |
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| Q |
301 |
ggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggaaagaaagaaa |
392 |
Q |
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|||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13887408 |
ggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaa |
13887499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 280 - 391
Target Start/End: Complemental strand, 7295853 - 7295738
Alignment:
| Q |
280 |
tttgtgtatggaaggctatgaggttt--cttaacttaggtatggaaagaaagctc--aagaaatcaatacaaaaagttgatgaatttgctgagaatgtta |
375 |
Q |
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||||||| ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
7295853 |
tttgtgtgtggaaagctatgacgtttttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatatta |
7295754 |
T |
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| Q |
376 |
taagggaaagaaagaa |
391 |
Q |
| |
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|||||| ||||||||| |
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| T |
7295753 |
taagggcaagaaagaa |
7295738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 7295946 - 7295876
Alignment:
| Q |
156 |
aatgtttgtatgatagcttttggtgttgatcctggttgtttacaacctcatttgcctgaaattccctttgc |
226 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||| |||||| |||||| |||||| || ||||| |
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| T |
7295946 |
aatgtttgcatgatatcttttggtgttgatcctggttgttcacaaccacatttgtttgaaataccatttgc |
7295876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 392
Target Start/End: Complemental strand, 1035151 - 1034762
Alignment:
| Q |
3 |
agtatcgagtttcattcgacaaattttaggaagttaacaattgagtcaatttttgagcttgtgaacaataggctcatacctgtcttagaatcatcattga |
102 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
1035151 |
agtatcgagtttcattcgacaaattttagaaagttaacaaatgagtcaatttttgagcttgtgaacaataggctcataccagtcttagaattatcattga |
1035052 |
T |
|
| Q |
103 |
agaaaaatgttgcaatagatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgtttacaacc |
202 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1035051 |
agaaaaatgttgccatagatcttcaagatattttgctgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgcttacaacc |
1034952 |
T |
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| Q |
203 |
tcatttgcctgaaattccctttgctgcagcttttgaggatgcaacagaagctactttgtttcgatttgtcatgccggtttgtgtatggaaggctatgagg |
302 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
1034951 |
tcatttgcctgaaattccctttgcaggagcttttgaggatgcaacagaagctattttgtttcgatttgtcgtgccgatttgtgtatggaaagctatgagg |
1034852 |
T |
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| Q |
303 |
tttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggaaagaaagaaa |
392 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1034851 |
tttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaa |
1034762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 28667315 - 28667238
Alignment:
| Q |
119 |
agatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgttt |
196 |
Q |
| |
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|||||||||||| ||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667315 |
agatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttttggtgttgatcctggttgttt |
28667238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 28667137 - 28667070
Alignment:
| Q |
297 |
atgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgc |
364 |
Q |
| |
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|||||| |||||||||||||| | |||||||| |||||||||||||| || |||||||||||||| |
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| T |
28667137 |
atgaggcttcttaacttaggtgtagaaagaaaactcaagaaatcaattaaaggggttgatgaatttgc |
28667070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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