View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10124_low_9 (Length: 372)
Name: NF10124_low_9
Description: NF10124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10124_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 4289765 - 4290123
Alignment:
| Q |
1 |
ctaattcagatactttattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289765 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4289864 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289865 |
aataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4289964 |
T |
|
| Q |
201 |
atttgtgtagcttcagaaagattcttaccagataaatgattgaaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289965 |
atttgtgtagcttcagaaagattcttaccagataaatgattgaaatcagcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaa |
4290064 |
T |
|
| Q |
301 |
tgattggtttgtgagaatcattaggccaaatgagatgacccaaaagaggataaaagtga |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4290065 |
tgattggtttgtgagaatcattaggccaaatgagatgacccaaaagaggataaaagtga |
4290123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 4260412 - 4260054
Alignment:
| Q |
1 |
ctaattcagatactttattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
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|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260412 |
ctaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4260313 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4260312 |
aataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatga |
4260213 |
T |
|
| Q |
201 |
atttgtgtagcttcagaaagattcttaccagataaatgattgaaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaa |
300 |
Q |
| |
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|| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||| |
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| T |
4260212 |
atctgtgtagcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattcagctacggtaagtgaaagagtgtttcctttgatgaatttaa |
4260113 |
T |
|
| Q |
301 |
tgattggtttgtgagaatcattaggccaaatgagatgacccaaaagaggataaaagtga |
359 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4260112 |
tgattggcttgtgagaatcatgaggccaaatgagatgacccaaaagaggataaaagtga |
4260054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 4265958 - 4265602
Alignment:
| Q |
1 |
ctaattcagatactttattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265958 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4265859 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265858 |
aataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4265759 |
T |
|
| Q |
201 |
atttgtgtagcttcagaaagattcttaccagataaatgattgaaatcatcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaa |
300 |
Q |
| |
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|||||| ||||||||| |||||||||||| || | ||||||||||||| ||| |||||||||||||||||||||||||| |||||| | |||||||| | |
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| T |
4265758 |
atttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagggtttcccttgatgaatttga |
4265659 |
T |
|
| Q |
301 |
tgattggtttgtgagaatcattaggccaaatgagatgacccaaaagaggataaaagt |
357 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4265658 |
tgattggcttgtgagaatcattaggccaagtgagatgacccaaaagaggataaaagt |
4265602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 27 - 357
Target Start/End: Original strand, 4298375 - 4298705
Alignment:
| Q |
27 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4298375 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
4298474 |
T |
|
| Q |
127 |
gaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattctt |
226 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4298475 |
gaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaggattctt |
4298574 |
T |
|
| Q |
227 |
accagataaatgattgaaatcatcatgagattcagctatggtaagtgaaagagtgtttcctctt-atgaatttaatgattggtttgtgagaatcattagg |
325 |
Q |
| |
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|||||||| || |||||||||| || ||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||| |
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| T |
4298575 |
accagatagataattgaaatcagaatcagattcagctatggtaagtgaaagagtgttt-ctcttgaagaatttgatgattggtttgtgagaatcattagg |
4298673 |
T |
|
| Q |
326 |
ccaaatgagatgacccaaaagaggataaaagt |
357 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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|
| T |
4298674 |
ccaagtgagatgacccaaaagaggataaaagt |
4298705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 4285109 - 4285293
Alignment:
| Q |
75 |
ccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaatacggtaacttgaagagccaaaacagaagcttgatcatgagaaa |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
175 |
tattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattgaaatcatcatgagattc |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| || |||||||||| |
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|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
4285293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4285066 - 4285111
Alignment:
| Q |
1 |
ctaattcagatactttattttcaagctttctacataggtaagccca |
46 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
4285066 |
ctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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