View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_high_10 (Length: 435)
Name: NF10125_high_10
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 45313755 - 45313350
Alignment:
| Q |
14 |
aggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagctttcatcc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45313755 |
aggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagttttcatcc |
45313656 |
T |
|
| Q |
114 |
attggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313655 |
attggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagt |
45313556 |
T |
|
| Q |
214 |
taataacctgactcgggcatcatgaaaaaggtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttacca |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45313555 |
taataacctgactcgggcatcatgaaaaaggtataagtttaattctgtagacttcattcaaaaggataaataagttagggattaagctttccttttacca |
45313456 |
T |
|
| Q |
314 |
gaacaggattgatagaacccaaactctcatccgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaaca |
413 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313455 |
gaacaggattgatagaacccaaactctcatctgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaaca |
45313356 |
T |
|
| Q |
414 |
ccaata |
419 |
Q |
| |
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|||||| |
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| T |
45313355 |
ccaata |
45313350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 27759430 - 27759029
Alignment:
| Q |
14 |
aggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagctttcatcc |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27759430 |
aggtgagagagatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagtg----ttcatcc |
27759335 |
T |
|
| Q |
114 |
attggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27759334 |
attggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaagttctttccacaagcctatctagaagcacagt |
27759235 |
T |
|
| Q |
214 |
taataacctgactcgggcatcatgaaaaaggtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttacca |
313 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759234 |
taataacctgactcgggcatcatgaaaaaggtataagcttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttacca |
27759135 |
T |
|
| Q |
314 |
gaacaggattgatagaacccaaactctcatccgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
27759134 |
gaacaggattgatagaacccaaactctcatccgaaagcatctgctactcttaaaagcagtagaatggcttccaaagagaagatagtttcctatttgaaca |
27759035 |
T |
|
| Q |
414 |
ccaata |
419 |
Q |
| |
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|||||| |
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|
| T |
27759034 |
ccaata |
27759029 |
T |
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