View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_high_14 (Length: 369)
Name: NF10125_high_14
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 39951976 - 39951622
Alignment:
| Q |
17 |
agatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattcaagtt |
116 |
Q |
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| T |
39951976 |
agatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcacccatttggagaccattcacttgacacagaccattcaagtt |
39951877 |
T |
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| Q |
117 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgtgcatgcatttg |
216 |
Q |
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| T |
39951876 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcatacgaagtaaatgtttgcagttgtgcatgcatttg |
39951777 |
T |
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| Q |
217 |
agcttgtgtcatgtgaaaatacatcagatacatgccagaa--ataaacttcagtaaatgatattctaaatagagaagagaataaaatcaaagtagtcaac |
314 |
Q |
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| T |
39951776 |
agcttgtgtcatgtgaaaatacatcagatacatgccagaaatataaacttcagtaaatgatattctaaatacagaagagaataaaatcaaagtagtcaac |
39951677 |
T |
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| Q |
315 |
agtgttatatgtatatgcatttcccacaccaatataccaaagaagtaggacagtt |
369 |
Q |
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| T |
39951676 |
agtgttatatgtatatgcatttcccacaccaatataccaaagaagtaggacagtt |
39951622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 34230678 - 34230932
Alignment:
| Q |
21 |
catacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattca-------- |
112 |
Q |
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| T |
34230678 |
catacccattatcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattcagctttggt |
34230777 |
T |
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| Q |
113 |
-------agttgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgt |
205 |
Q |
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| T |
34230778 |
tgatgcaagctgtttcctttccacgtaatcccaaaa-tacctagaacaacataatgaaaaacacatgaattcctcatacgaagcaaatgtttgcaattgt |
34230876 |
T |
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| Q |
206 |
gcatgcatttgagcttgtgtcatgtgaaaatacatcagatacatgccagaaataaa |
261 |
Q |
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| T |
34230877 |
gcatgcatctgagcttgtgtcatttgaaaatacatcagatacttgccagaaataaa |
34230932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 49198344 - 49198431
Alignment:
| Q |
269 |
aaatgatattctaaatagagaagagaataaaatcaaagtagtcaacagtgttatatgtatatgcatttcccacaccaatataccaaag |
356 |
Q |
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| T |
49198344 |
aaatgatattctaaatagagaagggaataaaattaaattagtcaacaatgttatatgtgtatgcatttgccacaacaatatactaaag |
49198431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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