View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_high_2 (Length: 652)

Name: NF10125_high_2
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_high_2
NF10125_high_2
[»] chr5 (1 HSPs)
chr5 (19-634)||(24255214-24255856)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 24255856 - 24255214
Alignment:
Q  19 cataggaactattgtgaatgnnnnnnntcgggtaacaattagtgtgtttagacttcaaaaacttgggtctttttcttctcatccaaatattttaattcaa 118  Q
    ||||||||||||||||||||       |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24255856 cataggaactattgtgaatgaaaaaaatcgggtaacaattattgtgtttagacttcaaaaacctgggtctttttcttctcatccaaatattttaattcaa 24255757  T
Q  119 gaaaaatgattcaatagaagagnnnnnnnncgtttttccaatttggatgcatgagtatggtgaaggtgcattaaagcnnnnnnnnnnnnnnnnnnngaag 218  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||                   ||||    
T  24255756 gaaaaatgattcaatagaagagaaagaaaacgtttttccaatttggatgcatgagtatggtgaaggtgcattaaagcaaaaaataataataaaaaagaag 24255657  T
Q  219 tggatgtgtgaactgtgttagagtagcaaaattcaatatagaacggatagaaaaatacacg-------atctcaatcccgcccccacttgtggaactcat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||       ||||||||||||||||||||||||||||||||    
T  24255656 tggatgtgtgaactgtgttagagtagcaaaattcaatatagaagggatagaaaaacacacggtatacaatctcaatcccgcccccacttgtggaactcat 24255557  T
Q  312 ttaaaatcattgcaaagcagtatgaaattgaccatttttagaatcgaatatgtgattttcagatgaat-----------------gccaaccactagacc 394  Q
    |||||||||||| ||||| ||||||||||||||||    |||||||||||||||||||| ||| ||||                 ||||||||||| |||    
T  24255556 ttaaaatcattgtaaagcggtatgaaattgaccatagagagaatcgaatatgtgattttgagaggaatacactccaacatctcaagccaaccacta-acc 24255458  T
Q  395 aatctcaaatagggttcaaagaatttaattaattcactataacaat----gcttacatgtattaactaatttaggctccatttgttggcactatgtattc 490  Q
    || ||||||||||||||||||||||||||||||||||||||||||     |||||   ||||||||||||||||||||||||||| ||||||||||||||    
T  24255457 aacctcaaatagggttcaaagaatttaattaattcactataacaaaactcgcttatcggtattaactaatttaggctccatttgtaggcactatgtattc 24255358  T
Q  491 ttttccaagaccatgtagaatttgtgtattcttcatcaaagtctcaccagccatcattaactactactattgggtaaatggaaaatgctatttaaagcga 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24255357 ttttccaagaccatgtagaatttgtgtattcttcatcaaagtctcacccgccatcattaactactattattgggtaaatggaaaatgctatttaaagcga 24255258  T
Q  591 acaacactatcttgaatatttcacgacacatgcatgtggcatgt 634  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  24255257 acaacactatctcgaatatttcacgacacatgcatgtggcatgt 24255214  T

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