View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_high_20 (Length: 313)

Name: NF10125_high_20
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_high_20
NF10125_high_20
[»] chr8 (2 HSPs)
chr8 (1-295)||(33352938-33353225)
chr8 (4-36)||(37436273-37436305)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 33352938 - 33353225
Alignment:
Q  1 accttgaaaataatttaagaaaatgaaataattaaaggtagatatgtgtgtagttaggtaccacacactttcaattagaagtctcaatttaggttttaat 100  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||      ||||||||||||||||| |||||||||| ||||||||||||     
T  33352938 accttaaaaataatttaggaaaatgaaataattaaaggtagatgtgtgttta------taccacacactttcaatcagaagtctcagtttaggttttaac 33353031  T
Q  101 ttgtatttgatatttttatatacactttgtaagaaaatatttgatttaatttcttaaaactactgcccatgacttagtagtcaggatgttatttgtcatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33353032 ttgtatttgatatttttatatacactttgtaagaaaatatttgatttaatttcttaaaactactgcccat-acttagtagtcaggatgttatttgtcatt 33353130  T
Q  201 atatgatcctcacaacacaagtagcatgtttgaggtaaacaagtgagagactcacatctacagaacgtggtatggaccaaggcttggttgtagag 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33353131 atatgatcctcacaacacaagtagcatgtttgaggtaaacaagtgagagactcacatcgacagaacgtggtatggaccaaggcttggttgtagag 33353225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 37436273 - 37436305
Alignment:
Q  4 ttgaaaataatttaagaaaatgaaataattaaa 36  Q
    |||| ||||||||||||||||||||||||||||    
T  37436273 ttgataataatttaagaaaatgaaataattaaa 37436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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