View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10125_high_21 (Length: 310)
Name: NF10125_high_21
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_21 |
 | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 2766211 - 2766485
Alignment:
| Q |
20 |
tcttgtgcttctacaacattgacacgaacataccacaatctcggagcatgatagacctttgaacgtatcactgtcgtagtagcaggcgtgctgtccacag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2766211 |
tcttgtgcttctacaacattgacacgaacgtaccacaacctcggagcatgatagacctttgaacgtatcactgtcgtagtagcaggcgtgctgtccacag |
2766310 |
T |
|
| Q |
120 |
gagaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcacctttaactttctccccttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2766311 |
gagaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcacctttaactttctccccttt |
2766410 |
T |
|
| Q |
220 |
cttatcgtcgaggcgataccattcgggtgccaaaggactatctggtggaactcttaaaggaatctcattgatgtc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2766411 |
cttatcgtcgaggcgataccattcgggtgccaaaggactatctggtggaactcttaaaggaatctcattgatgtc |
2766485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 36811353 - 36811429
Alignment:
| Q |
128 |
gcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcaccttt |
204 |
Q |
| |
|
|||||||| ||||| ||||||| ||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
36811353 |
gcatctgagtgccacgcctcaggaaaagcttcatcagcttgagtacccatccaaacagccagcatcaactccccttt |
36811429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 24951119 - 24951261
Alignment:
| Q |
125 |
gctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcacctttaactttctcccctttcttat |
224 |
Q |
| |
|
|||||||| |||||||| | |||| |||||| |||||||||||||| || |||||||| || ||||| ||||| || || |||||||| ||||| || |
|
|
| T |
24951119 |
gctgcatcagaatgccaagagtcaggaaatgcctcatctgcttgagttcccatccaaactgcaagcattaactctcccttgactttctcacctttgcgat |
24951218 |
T |
|
| Q |
225 |
cgtcgaggcgataccattcgggtgccaaaggactatctggtgg |
267 |
Q |
| |
|
| ||||| | |||||||| || |||||||| ||||||||||| |
|
|
| T |
24951219 |
cttcgagcctataccattgcggagccaaagggctatctggtgg |
24951261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 4368 - 4434
Alignment:
| Q |
122 |
gaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagcta |
188 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||||| ||||| || || ||||||||||||| |
|
|
| T |
4368 |
gaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagcta |
4434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 11704293 - 11704363
Alignment:
| Q |
134 |
gaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcaccttt |
204 |
Q |
| |
|
|||||||| || |||| ||| |||||||| ||||| ||||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
11704293 |
gaatgccaagcatcaggaaaggcttcatcggcttgcgtaccaaaccatacagcaagcatcaactccccttt |
11704363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University