View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10125_high_3 (Length: 649)
Name: NF10125_high_3
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_3 |
 | |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 19 - 649
Target Start/End: Complemental strand, 9392434 - 9391805
Alignment:
| Q |
19 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtatgttccaattatcaagatattgattattgttcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9392434 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtatgttccaattatcaagatattgattattgttcct |
9392335 |
T |
|
| Q |
119 |
cttactttgcattaattaagatttgcccgttacttaaggcttatagctaattatatgcaagattctaactgtgattattatttaacagcgagtgtaaaga |
218 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9392334 |
ctaactttgcattacttaagatttgcccgttacttaaggcttatagctaattatatgcaagattctaactttgattattatttaacagcgagtgtaaaga |
9392235 |
T |
|
| Q |
219 |
tgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaaccccttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9392234 |
tgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaaccccttc |
9392135 |
T |
|
| Q |
319 |
tttcacctctaatggttttatcaattctttgttattcattaaaatgatctgtactactttatgctcgtacagggccaagttgattttatttgtggtggac |
418 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
9392134 |
tttcacctctaatgg-tttatcaattctttgttattcattaaaatgatctgtactactttatgctcgtacagggccaagctgattttatttgtggtgggc |
9392036 |
T |
|
| Q |
419 |
caccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaatgctccgttggaggatgnnnnnnntaagcaattaattgtttacatgaacattat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9392035 |
caccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaatgctccgttggaggatgaaaaaaataagcaattaattgtttacatgaacattat |
9391936 |
T |
|
| Q |
519 |
tgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtgggccgtctagtg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9391935 |
tgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtgggccgtctagtg |
9391836 |
T |
|
| Q |
619 |
gccatgaattatcaagctcgaatgggaatga |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9391835 |
gccatgaattatcaagctcgaatgggaatga |
9391805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 649
Target Start/End: Complemental strand, 1340259 - 1339631
Alignment:
| Q |
19 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtatgttccaattatcaagatattgattattgttcct |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1340259 |
tcaggtgcagtggaagggttacgattccagttatgatacatgggagcccattgagggcttgaggtatattccaattatcaagatattgattattgttcct |
1340160 |
T |
|
| Q |
119 |
cttactttgcattaattaagatttgcccgttacttaaggcttatagctaattatatgcaagattctaactgtgattattatttaacagcgagtgtaaaga |
218 |
Q |
| |
|
| || |||| | | ||||||||||| |||| || |||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
1340159 |
caaacattgcttcacttaagatttgct-gttaatttaggcttatagttaattgtatgctagattccaactgtgattattgtttaacagcgagtgtaaaga |
1340061 |
T |
|
| Q |
219 |
tgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaaccccttc |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1340060 |
tgctatgaaagattttgtcataaatggatataaggaaaagatattgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaaccgcttc |
1339961 |
T |
|
| Q |
319 |
tttcacctctaatggttttatcaattctttgttattcattaaaatgatctgtactactttatgctcgtacagggccaagttgattttatttgtggtggac |
418 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||||||||||||||| | |
|
|
| T |
1339960 |
tttcacctctaatgg-tttatcaactctctgttattcattaaaattatctgcactactttatgcttgtccagggccaagccgattttatttgtggtgggc |
1339862 |
T |
|
| Q |
419 |
caccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaatgctccgttggaggatgnnnnnnntaagcaattaattgtttacatgaacattat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1339861 |
caccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaacgctccattggatgatgaaaaaaataagcaattaattgtttacatggacattat |
1339762 |
T |
|
| Q |
519 |
tgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtgggccgtctagtg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||| |||||||||||| |
|
|
| T |
1339761 |
caatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggaggatttctggggcgttatgctgtaggccgtctagtg |
1339662 |
T |
|
| Q |
619 |
gccatgaattatcaagctcgaatgggaatga |
649 |
Q |
| |
|
|| |||||||| |||||||| |||||||||| |
|
|
| T |
1339661 |
gcaatgaattaccaagctcgtatgggaatga |
1339631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 183 - 649
Target Start/End: Complemental strand, 31941932 - 31941470
Alignment:
| Q |
183 |
ctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31941932 |
ctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctc |
31941833 |
T |
|
| Q |
283 |
accactcctcattattgacttgtactcaaccccttctttcacctctaatggttttatcaattctttgttattcattaaaatgatctgtactactttatgc |
382 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31941832 |
accactc---attatttacttgtactcaaccccttctttcacctctaatggttt-atcaattctctgctattcattaaaatgatctgtactactttatgt |
31941737 |
T |
|
| Q |
383 |
tcgtacagggccaagttgattttatttgtggtggaccaccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaatgctccgttggaggatgn |
482 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31941736 |
tcttacagggccaagctgattttatttgtggtgggccaccttgtcaaggtgttagtggtttcaatcgctttaggaacaaaaatgctccgttggaggatga |
31941637 |
T |
|
| Q |
483 |
nnnnnntaagcaattaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggt |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31941636 |
aaaaaataagcaattaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggt |
31941537 |
T |
|
| Q |
583 |
gggtttctggggcgttatgctgtgggccgtctagtggccatgaattatcaagctcgaatgggaatga |
649 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31941536 |
gggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgggaatga |
31941470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 31942064 - 31941931
Alignment:
| Q |
19 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtatgttccaattatcaagatattgattattgttcct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31942064 |
tcaggtgcattggaagggttacgattccagtaatgatacgtgggagcccattgagggcttgaggtatgttccaatcatcaagatattgattattgttcct |
31941965 |
T |
|
| Q |
119 |
cttactttgcattaattaagatttgcccgttact |
152 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |
|
|
| T |
31941964 |
ctaactttgcattacttaagatttgcccgttact |
31941931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 388 - 649
Target Start/End: Complemental strand, 13538279 - 13538018
Alignment:
| Q |
388 |
cagggccaagttgattttatttgtggtggaccaccttgtcaaggtgttagtggtttcaatcgcttcaggaacaaaaatgctccgttggaggatgnnnnnn |
487 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || || | |||||| |
|
|
| T |
13538279 |
cagggtcaagctgatgttatttgtggtggaccaccttgtcaaggtgtttctggttttaatcgcttcaggaacaaaaacgcaccccttaaggatgttaaaa |
13538180 |
T |
|
| Q |
488 |
ntaagcaattaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtt |
587 |
Q |
| |
|
|| ||||||||| || || ||||| || ||||| ||||||||||| | || | || ||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
13538179 |
atatgcaattaatagtctatatgaatatcattgagttcttgaagccgagatacatactcatggagaatgtggttgacattttgaaatttgttggtgggtt |
13538080 |
T |
|
| Q |
588 |
tctggggcgttatgctgtgggccgtctagtggccatgaattatcaagctcgaatgggaatga |
649 |
Q |
| |
|
| |||| ||||||||| | |||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
13538079 |
tttgggacgttatgctttaggccgtcttgtagccatgaattatcaagctagaatgggaatga |
13538018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 13538669 - 13538604
Alignment:
| Q |
19 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggta |
84 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
13538669 |
tcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggta |
13538604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 13538475 - 13538345
Alignment:
| Q |
201 |
taacagcgagtgtaaagatgctatgaaagattttgttataaatggatataaggaaaagatactgcctcttcctgtaagtctcaccactcctcattattga |
300 |
Q |
| |
|
|||||| || ||||| ||||| ||| |||||| |||| || |||||||| || |||||| ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
13538475 |
taacagtgactgtaaggatgccttgagagatttagttacaacaggatataaagataagatattgcctcttcctgtgagtctcaccactccttgttattga |
13538376 |
T |
|
| Q |
301 |
cttgtactcaaccccttctttcacctctaat |
331 |
Q |
| |
|
||| ||||||| ||||||| |||| |||| |
|
|
| T |
13538375 |
attgcactcaacttcttcttttacctttaat |
13538345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 7e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 157 - 649
Target Start/End: Complemental strand, 5641998 - 5641510
Alignment:
| Q |
157 |
gcttatagctaattatatgcaagattctaactgtgattattatttaacagcgagtgtaaagatgctatgaaagattttgttataaatggatataaggaaa |
256 |
Q |
| |
|
|||||||||||| || ||||||||||||||| | ||| |||||||||||||| |||||||| ||||||||||| ||||||| || |||||| |||| | |
|
|
| T |
5641998 |
gcttatagctaaata-atgcaagattctaaccg--atttttatttaacagcgattgtaaagaggctatgaaagaatttgttactaaaggatatgaggata |
5641902 |
T |
|
| Q |
257 |
agatactgcctcttcctgtaagtctcaccactcctcattattgacttgtactcaacccc-ttctttcacctctaatggttttatcaatt--ctttgttat |
353 |
Q |
| |
|
||||| |||||||||||||||||||| | |||| ||||||| |||| |||||||||| |||||| ||||||||| |||| |||| | || ||||| |
|
|
| T |
5641901 |
agatattgcctcttcctgtaagtctcgcaactc---attattggcttgcactcaacccccttctttgacctctaattgtttg-tcaactgtctgtgttac |
5641806 |
T |
|
| Q |
354 |
tcattaaaatgatctgtactactttatgctcgtacagggccaagttgattttatttgtggtggaccaccttgtcaaggtgttagtggtttcaatcgcttc |
453 |
Q |
| |
|
|||||||| || | ||||||||||| |||| || ||||| |||| |||||| |||||||||||||| ||||| ||||| |||||||||||||||| ||| |
|
|
| T |
5641805 |
tcattaaattggtttgtactactttgtgcttgtccagggtcaagctgatttcatttgtggtggacccccttgccaagggattagtggtttcaatcgtttc |
5641706 |
T |
|
| Q |
454 |
aggaacaaaaatgctccgttggaggatgnnnnnnntaagcaattaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggaga |
553 |
Q |
| |
|
||| ||||||||||||| |||| || ||||||| |||| || |||||| | |||||||| || ||||||||||| ||| | ||||||||| |
|
|
| T |
5641705 |
agggacaaaaatgctcctatggatgacataaaaaataagcaactaatcgtctacatggatattattgaatttttgaagcctaaatatatattgatggaga |
5641606 |
T |
|
| Q |
554 |
atgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtgggccgtctagtggccatgaattatcaagctcgaatgggaatga |
649 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
5641605 |
atgttgttgacatattgaaatttgctggtgggtatctggggcgttatgctgtaggacgtctagtggccatgcattatcaagctagaatgggaatga |
5641510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5642125 - 5642059
Alignment:
| Q |
19 |
tcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggtat |
85 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
5642125 |
tcaggtgcagtggaagggttatgacaccagttatgatacatgggagccaattgagggcttgaggtat |
5642059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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