View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_high_38 (Length: 240)
Name: NF10125_high_38
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_38 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 21923182 - 21922962
Alignment:
| Q |
20 |
taatagtgtaaaaacataatttcaacaagttttgaaaatcataaaattttcaaaatgctccaaattaaaattttccttgaaatctatactcacaagtttc |
119 |
Q |
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| T |
21923182 |
taatagtgtaaaaacataatttcaacaggttttgaaaatcataaaattttcaaaatgctccaaattaaatttttcctcgaaatctatactcacaagtttc |
21923083 |
T |
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| Q |
120 |
agatctatgacttttgtaaaagaaattggaacaatttaaatcatgtccaaaaataggcctcacggccacctcttagtttcaagagaaatatccattttct |
219 |
Q |
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| T |
21923082 |
agatctatgacttttgtaaaagaaattggaacaatttaaatcatgtccaaaaataggcctcacggccacctcttagtttcaagagaaatatccattttct |
21922983 |
T |
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| Q |
220 |
tttttataaattaaccactct |
240 |
Q |
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| T |
21922982 |
ttattataaatcaaccactct |
21922962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 21925804 - 21925622
Alignment:
| Q |
54 |
aaaatcataaaattttcaaaatgctccaaattaaaattttccttgaaatctatactcacaagtttcagatctatgacttttgtaaaagaaattggaacaa |
153 |
Q |
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|||||||||||||| | |||||||||||||||||||| ||| || | ||||| |||||||||| |||||||||||||||||| | |||||| ||| || |
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| T |
21925804 |
aaaatcataaaattcttaaaatgctccaaattaaaatattctttaagatctacactcacaagtactagatctatgacttttgtataggaaatttgaaaaa |
21925705 |
T |
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| Q |
154 |
tttaaatcatgtccaaaaataggcctcacggccacctcttagtttcaagagaaatatccattttcttttttataaattaaccac |
237 |
Q |
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| T |
21925704 |
tcaaaatcatgt-aaaaaaaaagcctcgcctccatctcttagcttcaagagaaagatctattttctttattataaatgaaccac |
21925622 |
T |
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