View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_high_4 (Length: 591)
Name: NF10125_high_4
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 38991003 - 38991570
Alignment:
| Q |
1 |
gctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggt |
100 |
Q |
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| T |
38991003 |
gctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggt |
38991102 |
T |
|
| Q |
101 |
ccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgac |
200 |
Q |
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| T |
38991103 |
ccttcaatagtgagtggtggggtatgagataacgagctgtgaatggtgatgtcagagacaataccaaaacctctcagcactgtgatgtcagcttcatgac |
38991202 |
T |
|
| Q |
201 |
gccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgc |
300 |
Q |
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| T |
38991203 |
gccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgc |
38991302 |
T |
|
| Q |
301 |
aggtggcttgggcttgtttttggagccctttggtctgccccgagatctcttagaagagggtgctcttggtggtgatgttggcataaccaactgttcattg |
400 |
Q |
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| T |
38991303 |
aggtgtcttgggcttgtttttggagccctttggtctgccacgagatctcttagaggagggtgctcttggtggtgatgttggcataaccaactgttcattg |
38991402 |
T |
|
| Q |
401 |
ttattgtttgttgtggtagtgttggggagagaggttgagtgccctattatttctcccactatggcagaggaactgcctgaggatgcatgaaatctctcag |
500 |
Q |
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| T |
38991403 |
ttattgtttgttgttgtagtgttggggagagaggttgagtgccctattatttctcccactatggcagaggaactgcctgagggtgcataaaatctctcag |
38991502 |
T |
|
| Q |
501 |
atttgttctctaagaattctaaattcttagagtttggggattgagaaaagggtgcaaattctttctct |
568 |
Q |
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| T |
38991503 |
atttgttctctaagaattctaaattcttagagtttgaggattgagaaaagggtgcaaattctttctct |
38991570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 38954754 - 38954422
Alignment:
| Q |
19 |
agggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggt |
118 |
Q |
| |
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| T |
38954754 |
agggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagagacatcattttgatgggtccttcaatagttagtgca |
38954655 |
T |
|
| Q |
119 |
ggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatga |
218 |
Q |
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| T |
38954654 |
ggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctcattactgagatatcagcttgatgacgccaagccatcttgatga |
38954555 |
T |
|
| Q |
219 |
tggactccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtt |
318 |
Q |
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| T |
38954554 |
tggactccacaacatcacatccagctgatatttcgataaaaatttgtttcataaaactttcaggctctacggtgatcaccactgggggtttgggtttatt |
38954455 |
T |
|
| Q |
319 |
tttggagccctttggtctgccccgagatctctt |
351 |
Q |
| |
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|||||||||||||| ||| |||| |||||||| |
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| T |
38954454 |
tttggagccctttgatctaccccttgatctctt |
38954422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 18528036 - 18528173
Alignment:
| Q |
168 |
aacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgttt |
267 |
Q |
| |
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||||||||||||||| |||||| |||| || ||||||| ||| |||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
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| T |
18528036 |
aacctctcagcactgagatgtctgcttgataacgccaattcattttgatgatggactccacaacatcatactcaatagggattttaataaaaatttgttt |
18528135 |
T |
|
| Q |
268 |
cattaatgtttgaggctctaccataaccaccgcaggtgg |
306 |
Q |
| |
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|| ||| |||| |||||||||||||| |||| ||||||| |
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| T |
18528136 |
ca-taaggtttcaggctctaccataatcaccacaggtgg |
18528173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 549
Target Start/End: Complemental strand, 18527673 - 18527495
Alignment:
| Q |
364 |
tcttggtggtgatgttggcataaccaactgttcattgttattgtttgttgtggtagtgttggggagagaggttgagtgccctattatttctcccactatg |
463 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||| || ||| ||||||| |||||||||||||| |||| ||| ||||| |||||| ||| | || |
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| T |
18527673 |
tcttggtggtgatgttggcaaaaccaacttttcattgctaatgt---ttgtggtggtgttggggagagaagttgtgtgtcctatcatttctacca-tgtg |
18527578 |
T |
|
| Q |
464 |
gcagaggaactgcctgaggatgcatgaaatctctcagatttgttctctaagaattctaaattcttagagtttggggattgagaaaa |
549 |
Q |
| |
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|||||||||| | |||| || ||||||| ||||||||||| | ||||||| ||||||| |||||| ||||| |||||| |
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| T |
18527577 |
acagaggaactactcgagggtgtggaaaatctcagagatttgttctttgagaattc---attcttaaagtttgaggattaagaaaa |
18527495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 334
Target Start/End: Complemental strand, 18527925 - 18527758
Alignment:
| Q |
167 |
gaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtt |
266 |
Q |
| |
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|||||||||| ||| | |||||| || ||| |||||||||||| ||||||||| |||| || |||||| ||||| |||||||||||| ||| ||| |
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| T |
18527925 |
gaacctctcatcacagatatgtcatctagatgtcgccaagccatcctgatgatggtttccataaaatcatatatagcagagatttcaataaaaattagtt |
18527826 |
T |
|
| Q |
267 |
tcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccctttggt |
334 |
Q |
| |
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|||| || |||| || |||||||| | |||| || ||| ||||| ||||| ||| ||||||||||| |
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| T |
18527825 |
tcataaaagttttgggatctaccatgatcaccacatatggtttgggtttgttcttgtagccctttggt |
18527758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 18528271 - 18528339
Alignment:
| Q |
351 |
tagaagagggtgctct-tggtggtgatgttggcataacc-aactgttcattgttattgtttgttgtggt |
417 |
Q |
| |
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|||| |||||||||| ||||||| |||||||||||||| |||| |||||||||| ||||||| ||||| |
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| T |
18528271 |
tagaggagggtgctccctggtggttatgttggcataacctaacttttcattgttaatgtttgtggtggt |
18528339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 567
Target Start/End: Complemental strand, 38954247 - 38954203
Alignment:
| Q |
523 |
attcttagagtttggggattgagaaaagggtgcaaattctttctc |
567 |
Q |
| |
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| T |
38954247 |
attctcagtgtttgaggattgagaaaagggtgcaagttctttctc |
38954203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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