View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_high_7 (Length: 512)
Name: NF10125_high_7
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 263 - 444
Target Start/End: Complemental strand, 16937510 - 16937333
Alignment:
| Q |
263 |
gttataaatgagtttaatatattggttcatgtttatgatgcaactcttcatattctttgtttcagtagtcacaaaagttctacttgtcaagggttttatt |
362 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16937510 |
gttataaatgagtttaatatattggttgatgtttatgatgcaactcttcatattctttgtttcagtggtcacaaaagttctacttgtcaagggttttatt |
16937411 |
T |
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| Q |
363 |
atatatgaatgatgtggtgattatgtttattatatgttggaagtaaattacaacatacaatgttttgaaagataaataaaaa |
444 |
Q |
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| T |
16937410 |
atat----atgatgtggtgattatgtttattatatgttggaagtaaattacaacatacaatgttttgaaagataaataaaaa |
16937333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 263 - 444
Target Start/End: Complemental strand, 17008174 - 17007997
Alignment:
| Q |
263 |
gttataaatgagtttaatatattggttcatgtttatgatgcaactcttcatattctttgtttcagtagtcacaaaagttctacttgtcaagggttttatt |
362 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17008174 |
gttataaatgagtttaatatattggttgatgtttatgatgcaactcttcatattctttgtttcagtggtcacaaaagttctacttgtcaagggttttatt |
17008075 |
T |
|
| Q |
363 |
atatatgaatgatgtggtgattatgtttattatatgttggaagtaaattacaacatacaatgttttgaaagataaataaaaa |
444 |
Q |
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| T |
17008074 |
atat----atgatgtggtgattatgtttattatatgttggaagtaaattacaacatacaatgttttgaaagataaataaaaa |
17007997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 16937615 - 16937573
Alignment:
| Q |
197 |
ttatatattgtaacaaaaaggataactggaatctcgtttctga |
239 |
Q |
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| T |
16937615 |
ttatatattgtaacaaaaaggataactggaatctcgtttctga |
16937573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 17008282 - 17008240
Alignment:
| Q |
197 |
ttatatattgtaacaaaaaggataactggaatctcgtttctga |
239 |
Q |
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| T |
17008282 |
ttatatattgtaacaaaaaggataactggaatctcgtttctga |
17008240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 16937303 - 16937252
Alignment:
| Q |
438 |
ataaaaactacacattaattgggatagcttttgaattaactaaaatttgtaaaggt |
493 |
Q |
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| T |
16937303 |
ataaaaactacac----attgggatagcttttgaattaactaaaatttgtaaaggt |
16937252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 17007967 - 17007916
Alignment:
| Q |
438 |
ataaaaactacacattaattgggatagcttttgaattaactaaaatttgtaaaggt |
493 |
Q |
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| T |
17007967 |
ataaaaactacac----attgggatagcttttgaattaactaaaatttgtaaaggt |
17007916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 12936089 - 12936021
Alignment:
| Q |
93 |
ctaatttacgaaaatgccc--ccataagggcaaaatggtcnnnnnnngggacaaagattgtcctatata |
159 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12936089 |
ctaatttacgaaaatgcccttccataagggcaaaatggtcaaaaaaagggacaaagattgtcctatata |
12936021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 33105934 - 33106005
Alignment:
| Q |
92 |
actaatttacgaaaatgccc----ccataagggcaaaatggtcnnnnnnngggacaaagattgtcctatata |
159 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33105934 |
actaatttacgaaaatgcccccttccataagggcaaaatggtcaacaaaagggacaaagattgtcctatata |
33106005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 49018550 - 49018481
Alignment:
| Q |
92 |
actaatttacgaaaatgccccc--ataagggcaaaatggtcnnnnnnngggacaaagattgtcctatata |
159 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
49018550 |
actaatttacgaaaatgccctcctataagggcaaaatggtcaaaaaaagggacaaagattgtcctatata |
49018481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 27897479 - 27897548
Alignment:
| Q |
92 |
actaatttacgaaaatgccc--ccataagggcaaaatggtcnnnnnnngggacaaagattgtcctatata |
159 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
27897479 |
actaatttacgaaaatgcccttctataagggcaaaatggtccaaaaaagggacaaagattgtcctatata |
27897548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 32448429 - 32448493
Alignment:
| Q |
93 |
ctaatttacgaaaatgccc--ccataagggcaaaatggtcnnnnnnngggacaaagattgtccta |
155 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
32448429 |
ctaatttacgaaaatgcccttccataagggcaaaatggtcaaaaaaagggacaaagattgtccta |
32448493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 27015394 - 27015431
Alignment:
| Q |
92 |
actaatttacgaaaatgcccccataagggcaaaatggt |
129 |
Q |
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|||||||||| ||||| ||||||||||||||||||||| |
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| T |
27015394 |
actaatttaccaaaatacccccataagggcaaaatggt |
27015431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 27267131 - 27267092
Alignment:
| Q |
92 |
actaatttacgaaaatgccc--ccataagggcaaaatggt |
129 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
27267131 |
actaatttacgaaaatgcccttccataagggcaaaatggt |
27267092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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