View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_high_8 (Length: 503)

Name: NF10125_high_8
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_high_8
NF10125_high_8
[»] chr7 (17 HSPs)
chr7 (13-493)||(29922090-29922564)
chr7 (307-493)||(29476437-29476623)
chr7 (350-496)||(29881086-29881232)
chr7 (303-493)||(29106591-29106781)
chr7 (358-493)||(29899206-29899341)
chr7 (363-492)||(29920141-29920270)
chr7 (307-493)||(29454200-29454386)
chr7 (352-493)||(29867071-29867212)
chr7 (358-493)||(29885086-29885221)
chr7 (352-493)||(29895298-29895439)
chr7 (89-156)||(29431429-29431496)
chr7 (352-451)||(29859286-29859385)
chr7 (353-453)||(29431135-29431235)
chr7 (390-449)||(18953046-18953105)
chr7 (390-449)||(18983093-18983152)
chr7 (390-449)||(18997739-18997798)
chr7 (96-156)||(29898953-29899013)
[»] chr1 (8 HSPs)
chr1 (353-493)||(4366592-4366732)
chr1 (88-152)||(4366924-4366988)
chr1 (377-451)||(4570780-4570854)
chr1 (358-448)||(21855525-21855615)
chr1 (387-443)||(4016919-4016974)
chr1 (366-449)||(10218825-10218908)
chr1 (376-481)||(39379170-39379275)
chr1 (366-493)||(17560870-17560997)
[»] chr4 (4 HSPs)
chr4 (358-493)||(1686382-1686517)
chr4 (358-493)||(3565582-3565717)
chr4 (376-493)||(3557582-3557699)
chr4 (361-443)||(3561105-3561187)
[»] chr3 (1 HSPs)
chr3 (361-493)||(3625575-3625707)
[»] chr5 (1 HSPs)
chr5 (358-448)||(24331041-24331131)
[»] scaffold0242 (2 HSPs)
scaffold0242 (307-457)||(13863-14013)
scaffold0242 (307-457)||(22698-22848)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Complemental strand, 29922564 - 29922090
Alignment:
Q  13 catcaatcaggacaacaacatcagaaaaatttgggtatttttatgattttggaccaatttcggggtatggaggcgatttcaatttcaaatttggttttga 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922564 catccatcaggacaacaacatcagaaaaatttgggtatttttatgattttggaccaatttcggggtatggaggcgatttcaatttcaaatttggttttga 29922465  T
Q  113 caattcaactgatacttataaggtgttggcgttccgttacaatcgactaaaaggaaatagaaatataaagattctaggttcgggtgatcatgtttggaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922464 caattcaactgatacttataaggtgttggcgttccgttacaatagactaaaaggaaatagaaatataaagattctaggttcgggtgatcatgtttggaga 29922365  T
Q  213 gatattgcatttttcccggtggttcctcttcgtttggactatagtgatcatattcatagtgaacattgtatgtgtgatggtgtttacgtaagtggcactt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922364 gatattgcatttttcccggtggttcctcttcgtttggactatagtgatcatattcatagtgaacattgtatgtgtgatggtgtttacgtaagtggcactt 29922265  T
Q  313 ttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacata 412  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29922264 ttaactggttggctatccacaacgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtttctcttgatttagggacggagacata 29922165  T
Q  413 caatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
    ||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922164 caatcaatatctgttgcctc------ttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 29922090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 29476623 - 29476437
Alignment:
Q  307 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 406  Q
    ||||| |||| ||||||||||| ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||||| || ||    
T  29476623 gcactcttaattggttggctattcacaatgactttgactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttaggaactga 29476524  T
Q  407 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
    ||||||||||||||| |   ||||||||| |||||||||| ||||||||||    ||||  |||| |||||||||||||| ||||||    
T  29476523 gacatacaatcaataccgtctgcctcgtgattttgatgaaatgccatctgccctgccaattgttgctgtgttggggggcttcctttg 29476437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 496
Target Start/End: Original strand, 29881086 - 29881232
Alignment:
Q  350 tgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 449  Q
    ||||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||||||||   ||||||   |||||||||| |||    
T  29881086 tgttaaggatattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatgaggtg 29881185  T
Q  450 ccatctgcagaaccaaccgttggtgtgttggggggctgcctttgctt 496  Q
    ||| |||||  |||||  ||||||||||||| || ||||||||||||    
T  29881186 ccacctgcacgaccaattgttggtgtgttggaggactgcctttgctt 29881232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 493
Target Start/End: Original strand, 29106591 - 29106781
Alignment:
Q  303 agtggcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttaggga 402  Q
    ||||||||| |||||||||||||||| ||||||  |||    |||  | || || ||||||||||||  || |||||||| || || |||||||   |||    
T  29106591 agtggcactcttaactggttggctattcacaatagcctcgattataattttgaggatattacagttggtcaatttgttattgtttcacttgattggagga 29106690  T
Q  403 cggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     ||||||||||||||||||   |||||||||||| |||||||||||||| ||   |   ||||| ||||||||||||||||||||||||||    
T  29106691 tggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtgttggggggctgcctttg 29106781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 493
Target Start/End: Original strand, 29899206 - 29899341
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29899206 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29899305  T
Q  458 agaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     || |||||  |||||||||||||||||||||||||    
T  29899306 ggagccaacatttggtgtgttggggggctgcctttg 29899341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 492
Target Start/End: Complemental strand, 29920270 - 29920141
Alignment:
Q  363 acagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaac 462  Q
    ||||||||||| |||||||| || |||||  |||| ||||| ||||| ||| |||| ||| |  |||| ||||| |||||||||||||||  || |||||    
T  29920270 acagttgaacaatttgttattgtttctctccatttggggacagagacctaccatcagtatttactgccccgtggatttgatgaagtgccacttgtagaac 29920171  T
Q  463 caaccgttggtgtgttggggggctgccttt 492  Q
    ||||  ||||||||||||| ||||||||||    
T  29920170 caactcttggtgtgttgggaggctgccttt 29920141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 29454386 - 29454200
Alignment:
Q  307 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 406  Q
    ||||| |||| ||||||||||| |||||| || | | ||||  |  ||||||||| |||||||| || ||||||||  | || |||||||| ||||| ||    
T  29454386 gcactcttaattggttggctattcacaatcacttgcactataatagtaagaatatcacagttgagcagtttgttattatttcacttgatttggggactga 29454287  T
Q  407 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
    ||| |||||| | || |  |||||||||| ||||||||| |||||| ||| ||  ||||| |||||||| ||||||||  |||||||    
T  29454286 gacgtacaataagtaccaattgcctcgtgattttgatgaggtgccacctgaagctccaacggttggtgttttggggggaagcctttg 29454200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 493
Target Start/End: Original strand, 29867071 - 29867212
Alignment:
Q  352 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 451  Q
    ||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||| |||||||||||| |   ||||||   |||||||||| |||||    
T  29867071 ttaaggatattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatcaataccgactgcctccaagttttgatgaggtgcc 29867170  T
Q  452 atctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     |||||| | || |  |||||||||||||||| |||||||||    
T  29867171 gtctgcatatcctattgttggtgtgttgggggactgcctttg 29867212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 493
Target Start/End: Original strand, 29885086 - 29885221
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29885086 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29885185  T
Q  458 agaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     || |||||  |||||||| | ||||||||||||||    
T  29885186 ggagccaacatttggtgtgctagggggctgcctttg 29885221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 493
Target Start/End: Original strand, 29895298 - 29895439
Alignment:
Q  352 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 451  Q
    |||||||| ||| |||||| || |||||||| || || |||||  | || |||||||| ||||||||||| ||| ||||||  ||||||||||| |||||    
T  29895298 ttaagaatcttagagttgagcaatttgttattgtttcgcttgagctgggaacggagacttacaatcaatacctgctgcctctgggttttgatgaggtgcc 29895397  T
Q  452 atctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
      || || ||||||| ||| |||| ||||| ||||| |||||    
T  29895398 ccctacacaaccaacggttagtgtcttgggtggctgtctttg 29895439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 29431496 - 29431429
Alignment:
Q  89 tttcaatttcaaatttggttttgacaattcaactgatacttataaggtgttggcgttccgttacaatc 156  Q
    |||||| || || ||||||||||||||| |||| || |||||||||||| |||||| |||||||||||    
T  29431496 tttcaagtttaactttggttttgacaatgcaaccgacacttataaggtggtggcgtcccgttacaatc 29431429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 29859286 - 29859385
Alignment:
Q  352 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 451  Q
    ||||| ||||||| || ||||| |||||||| || || |||||||| ||||  || ||||||||||||||  | ||||||||||| |||||||| |||||    
T  29859286 ttaaggatattactgtcgaacaatttgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgcc 29859385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 29431235 - 29431135
Alignment:
Q  353 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 452  Q
    |||| |||||||| |||| || ||||||||  | || |||||||| ||||| |||||||| ||| | ||  |||||||||||| ||||||||| ||||||    
T  29431235 taaggatattacaattgagcagtttgttattctttcgcttgatttggggactgagacatataataagtacttgttgcctcgtgattttgatgaggtgcca 29431136  T
Q  453 t 453  Q
    |    
T  29431135 t 29431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 18953105 - 18953046
Alignment:
Q  390 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 449  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18953105 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 18983152 - 18983093
Alignment:
Q  390 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 449  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18983152 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18983093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 18997798 - 18997739
Alignment:
Q  390 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 449  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18997798 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18997739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 29898953 - 29899013
Alignment:
Q  96 ttcaaatttggttttgacaattc-aactgatacttataaggtgttggcgttccgttacaatc 156  Q
    ||||||||||||||||||||||| ||| || |||||||||||| |||| | |||||||||||    
T  29898953 ttcaaatttggttttgacaattcaaacaga-acttataaggtggtggcataccgttacaatc 29899013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 493
Target Start/End: Complemental strand, 4366732 - 4366592
Alignment:
Q  353 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 452  Q
    |||||||||||| ||||| || |||||||| || || |||||| | || || |||||||||||||||||  || |||||||||||||||| |||||||||    
T  4366732 taagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgcca 4366633  T
Q  453 tctgcagaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     || | |||||||| |||||||||||||||| |||||||||    
T  4366632 cctactgaaccaacagttggtgtgttgggggactgcctttg 4366592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 4366988 - 4366924
Alignment:
Q  88 atttcaatttcaaatttggttttgacaattcaactgatacttataaggtgttggcgttccgttac 152  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||| || |||||||    
T  4366988 atttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttac 4366924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 4570780 - 4570854
Alignment:
Q  377 tgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 451  Q
    |||||| || ||||||||||| | |||||||||||||||||||||  || ||||||||||  |||||||||||||    
T  4570780 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgcc 4570854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 21855615 - 21855525
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagt 448  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| |||||||||||||||    
T  21855615 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagt 21855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 4016974 - 4016919
Alignment:
Q  387 tctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgat 443  Q
    ||||||||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  4016974 tctcttgattt-gggacggagacatacaatcaatacatggtgcctcgtggttttgat 4016919  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 10218825 - 10218908
Alignment:
Q  366 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 449  Q
    |||||||| | |||||| || ||||||||||| | |||||||||||||||||||||  || ||||  ||||||||||| |||||    
T  10218825 gttgaacactctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtg 10218908  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 39379275 - 39379170
Alignment:
Q  376 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 475  Q
    ||||||| || || |||||||| ||||| || |||||||| || |||| ||||||| | ||||||||||| || || |||||||| ||||   |||||||    
T  39379275 ttgttattgtttcacttgatttggggactgaaacatacaaccagtatcggttgccttggggttttgatgaggttccgtctgcagagccaagttttggtgt 39379176  T
Q  476 gttggg 481  Q
    ||||||    
T  39379175 gttggg 39379170  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 493
Target Start/End: Complemental strand, 17560997 - 17560870
Alignment:
Q  366 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaa 465  Q
    |||||||| |||| ||| || || ||||||||  |||| |||||||||||| | ||  | |||||||||| |||||| || |||||| |   ||||||||    
T  17560997 gttgaacaatttggtattgtttcgcttgatttgaggactgagacatacaattagtacttattgcctcgtgattttgacgaggtgccaaccatagaaccaa 17560898  T
Q  466 ccgttggtgtgttggggggctgcctttg 493  Q
    |  ||||||||||||||| ||| |||||    
T  17560897 cttttggtgtgttgggggactgtctttg 17560870  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 493
Target Start/End: Complemental strand, 1686517 - 1686382
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    ||||||| ||||||||  ||||||| || || ||| |||| ||||| ||||||||||||||||||| ||||||||  ||||||| ||| |||||   |      
T  1686517 atattactgttgaacagattgttattgtttcacttaatttggggactgagacatacaatcaatatcggttgcctcagggttttgctgaggtgccgcttat 1686418  T
Q  458 agaaccaaccgttggtgtgttggggggctgcctttg 493  Q
    ||| ||||| |||||||||||||||| |||||||||    
T  1686417 agagccaactgttggtgtgttgggggactgcctttg 1686382  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 493
Target Start/End: Original strand, 3565582 - 3565717
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    ||||||| ||||| ||  ||||||| || || |||||||||||||| ||| ||||||| ||||||| ||||||||  ||||||||||| || ||  |||     
T  3565582 atattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatgaggttccgactga 3565681  T
Q  458 agaaccaaccgttggtgtgttggggggctgcctttg 493  Q
     || ||||| |||||||||||| ||| |||||||||    
T  3565682 ggagccaactgttggtgtgttgagggactgcctttg 3565717  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 3557582 - 3557699
Alignment:
Q  376 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 475  Q
    ||||||| || || |||||||| ||||| ||| ||||||| ||||||| ||||||||| |||||||||||  ||||  |||  || ||||||||||||||    
T  3557582 ttgttattgtttcacttgatttggggactgagtcatacaaccaatatcggttgcctcggggttttgatgagatgccgactgaggagccaaccgttggtgt 3557681  T
Q  476 gttggggggctgcctttg 493  Q
    |||| ||| ||| |||||    
T  3557682 gttgagggactgtctttg 3557699  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 3561187 - 3561105
Alignment:
Q  361 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgat 443  Q
    |||||||||| || |||||||| || || |||||| | || || |||||||||||||||||| |||||||||| |||||||||    
T  3561187 ttacagttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatcaatatttgttgcctcggggttttgat 3561105  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 493
Target Start/End: Original strand, 3625575 - 3625707
Alignment:
Q  361 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga 460  Q
    |||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||| |||  | |||||||||| |||||| | |||||  ||  |||    
T  3625575 ttactgttgagcaatttgttattgtttcacttgatttggggactgagacatacaatcactattggctgcctcgtggatttgataaggtgcctcctataga 3625674  T
Q  461 accaaccgttggtgtgttggggggctgcctttg 493  Q
    |||||  |||||||||||||||| |||||||||    
T  3625675 accaaatgttggtgtgttgggggactgcctttg 3625707  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 24331131 - 24331041
Alignment:
Q  358 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagt 448  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| |||||||||||||||    
T  24331131 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagt 24331041  T

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Target: scaffold0242 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 457
Target Start/End: Complemental strand, 14013 - 13863
Alignment:
Q  307 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 406  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  14013 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 13914  T
Q  407 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    
T  13913 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgc 13863  T

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Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 457
Target Start/End: Complemental strand, 22848 - 22698
Alignment:
Q  307 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 406  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  22848 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 22749  T
Q  407 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 457  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    
T  22748 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgc 22698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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