View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_1 (Length: 832)
Name: NF10125_low_1
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 453 - 816
Target Start/End: Complemental strand, 14755370 - 14755015
Alignment:
| Q |
453 |
tcatgtattccctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaatttatatcagattcatttagactagatacatgtatctggtt |
552 |
Q |
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| T |
14755370 |
tcatgtattccctccgtaacaaaatatataagcaaaaaagtatatatatttggtctaaatttagatcagattcatttagacg--------gtatctggtt |
14755279 |
T |
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| Q |
553 |
aaaatttgggccacatacatgagatttttatttatattttgttacggaaggagtatgtttgtatatctgtgggtgtcaaaatgtaaaatttaagaagaga |
652 |
Q |
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| T |
14755278 |
aaaatttgggccacatacatgagatttttatttatattttgttacggaaggagtatgtttgtacatctgtaggtgccaaaatataaaatttaagaagtga |
14755179 |
T |
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| Q |
653 |
aaaagacactaatattgatggaaaattttcaatatcacctttacagagtttggtcaaagaacgtgatcaagcaggtctaaagaagaactcaacagaagtt |
752 |
Q |
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| T |
14755178 |
aaaggacactaatattgatggaaaattttcaatatcacctttacagagtttggtcaaagaacgtgatcaagcaggtctaaagaagaactcaacagaagtt |
14755079 |
T |
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| Q |
753 |
cacaaattcatagaagaacttgttaaaattggtaaagtatttatagatttttcatcaattttat |
816 |
Q |
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| T |
14755078 |
cacaaattcatagaagaacttgttaaaattggtaaagtatttatagatttttcatcaattttat |
14755015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 223 - 393
Target Start/End: Complemental strand, 14755603 - 14755433
Alignment:
| Q |
223 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
322 |
Q |
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| T |
14755603 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
14755504 |
T |
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| Q |
323 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
393 |
Q |
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| T |
14755503 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
14755433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 14755804 - 14755623
Alignment:
| Q |
7 |
aggagcacagagaaaaacacagaagaagaaaaa--catttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttg |
104 |
Q |
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| T |
14755804 |
aggaccacagagaaaaacacagaagaaaaaaaaaacatttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttg |
14755705 |
T |
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| Q |
105 |
agaagaatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
186 |
Q |
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| T |
14755704 |
agaagaatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
14755623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 30102689 - 30102639
Alignment:
| Q |
463 |
cctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaattta |
515 |
Q |
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| T |
30102689 |
cctctgtaacaaaatat--aggcaaaaaagtatatgtatctggtccaaattta |
30102639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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