View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_low_10 (Length: 468)

Name: NF10125_low_10
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_low_10
NF10125_low_10
[»] chr5 (13 HSPs)
chr5 (31-449)||(30429417-30429838)
chr5 (31-445)||(30522844-30523253)
chr5 (31-445)||(30563184-30563593)
chr5 (195-324)||(29870857-29870986)
chr5 (195-333)||(30202743-30202881)
chr5 (205-323)||(30205113-30205231)
chr5 (203-324)||(30398685-30398806)
chr5 (202-261)||(30482066-30482125)
chr5 (202-272)||(4380387-4380457)
chr5 (202-264)||(30395899-30395961)
chr5 (202-324)||(30434493-30434615)
chr5 (165-341)||(30473960-30474136)
chr5 (195-247)||(30678543-30678595)
[»] chr4 (2 HSPs)
chr4 (202-340)||(52350549-52350687)
chr4 (202-347)||(20303939-20304083)
[»] chr7 (1 HSPs)
chr7 (208-363)||(26705895-26706050)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 31 - 449
Target Start/End: Complemental strand, 30429838 - 30429417
Alignment:
Q  31 ttggaaatatctgattacccaaa---agtgaatgcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttg 127  Q
    |||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30429838 ttggaaatatctgatttcccaaattaagtgaatgcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttg 30429739  T
Q  128 attcattaccggaacaactttttgaaggtctactctacgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30429738 attcattaccggaacaactttttgaaggtctactctacgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtatt 30429639  T
Q  228 cggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaataggagaggactgggacaagatagaac 327  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30429638 ctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaataggagaggactgggacaagatagaac 30429539  T
Q  328 acattcctaaattatatattaattagactgaagaagaagaaacttttgaccaacattgattccaatacaatatgccaaataatatagaatcatttgtata 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  30429538 acattcctaaattatatattaattagactgaagaagaagaaacttttgaccaacattgattccaatacagtatgccgaataatatagaatcatttgtata 30429439  T
Q  428 ttaagaccatgtatattcaaat 449  Q
    ||||||||||||||||||||||    
T  30429438 ttaagaccatgtatattcaaat 30429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 31 - 445
Target Start/End: Original strand, 30522844 - 30523253
Alignment:
Q  31 ttggaaatatctgattacccaaaagtgaatgcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttgatt 130  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30522844 ttggaaatatctgatttcccaaaagtgaaagcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttgact 30522943  T
Q  131 cattaccggaacaactttttgaaggtctactctacgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtattcgg 230  Q
    ||||||| |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30522944 cattaccagaacaactttttgaaggtcta-----cgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtattcgc 30523038  T
Q  231 cacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaataggagaggactgggacaagatagaacaca 330  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||| | |||||||||||||||||||| |||||||||||    
T  30523039 cacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaataggagaggactgggacatgatagaacaca 30523138  T
Q  331 ttcctaaattatatattaattagactgaagaagaagaaacttttgaccaacattgattccaatacaatatgccaaataatatagaatcatttgtatatta 430  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30523139 ttccaaaattatctattaattagattgaagaagaagaaacttttgaccaacattgattccattacaatatgccaaataatatagaatcatttgtatatta 30523238  T
Q  431 agaccatgtatattc 445  Q
    |||||||||||||||    
T  30523239 agaccatgtatattc 30523253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 31 - 445
Target Start/End: Original strand, 30563184 - 30563593
Alignment:
Q  31 ttggaaatatctgattacccaaaagtgaatgcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttgatt 130  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30563184 ttggaaatatctgatttcccaaaagtgaaagcattgccaagtgaagccttcaacctagctttggagcatcttggtatccatcactgttgtgagcttgact 30563283  T
Q  131 cattaccggaacaactttttgaaggtctactctacgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtattcgg 230  Q
    ||||||| |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30563284 cattaccagaacaactttttgaaggtcta-----cgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtattcgc 30563378  T
Q  231 cacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaataggagaggactgggacaagatagaacaca 330  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||| | |||||||||||||||||||| |||||||||||    
T  30563379 cacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaataggagaggactgggacatgatagaacaca 30563478  T
Q  331 ttcctaaattatatattaattagactgaagaagaagaaacttttgaccaacattgattccaatacaatatgccaaataatatagaatcatttgtatatta 430  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30563479 ttccaaaattatctattaattagattgaagaagaagaaacttttgaccaacattgattccattacaatatgccaaataatatagaatcatttgtatatta 30563578  T
Q  431 agaccatgtatattc 445  Q
    |||||||||||||||    
T  30563579 agaccatgtatattc 30563593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 324
Target Start/End: Complemental strand, 29870986 - 29870857
Alignment:
Q  195 tgtgaaagattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaagg 294  Q
    |||||| ||||| |||||||||| || |||||||| |||||||| ||||||||| ||||| ||||| | ||||||||| |  ||  ||| ||||| || |    
T  29870986 tgtgaaggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaag 29870887  T
Q  295 agggaataggagaggactgggacaagatag 324  Q
    |||||| ||| ||||| |||||||||||||    
T  29870886 agggaacaggggaggattgggacaagatag 29870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 333
Target Start/End: Complemental strand, 30202881 - 30202743
Alignment:
Q  195 tgtgaaagattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaagg 294  Q
    ||||||||||| | |||||||| |||||||||| | |||||||| ||||||||  | ||||||||||  |||||||||    | | ||| ||||| ||||    
T  30202881 tgtgaaagattaaaatgcttgctagaaggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaagg 30202782  T
Q  295 agggaataggagaggactgggacaagatagaacacattc 333  Q
    |||||| ||| ||| ||||||||||||||| ||| ||||    
T  30202781 agggaacaggggagaactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 30205231 - 30205113
Alignment:
Q  205 tgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaatagg 304  Q
    |||||||||| || ||||||||||| || ||||| || || ||| |||||||||||  |||||| ||| |  ||   |||||||| |||||||||| |||    
T  30205231 tgagatgcttaccggaaggtattcgacatctcacttctctggagcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacagg 30205132  T
Q  305 agaggactgggacaagata 323  Q
    |||||||||| ||||||||    
T  30205131 agaggactggtacaagata 30205113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 30398806 - 30398685
Alignment:
Q  203 attgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaata 302  Q
    |||| ||||||| || || |||||| | |||||||| || |||||||||||||||||  ||| ||||||| |  ||| ||| ||||| || ||||||| |    
T  30398806 attgcgatgctttccggagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaaca 30398707  T
Q  303 ggagaggactgggacaagatag 324  Q
    || ||||| |||||||||||||    
T  30398706 ggggaggattgggacaagatag 30398685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 30482125 - 30482066
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaattt 261  Q
    ||||| |||||||||| || |||||||| |||||||| || |||||||||||||||||||    
T  30482125 gattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaattt 30482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 4380457 - 4380387
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgccca 272  Q
    ||||| |||||||||| || |||||||| |||||||| || ||||||||||||| |||   ||||||||||    
T  4380457 gattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatcattggttgccca 4380387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 30395961 - 30395899
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatg 264  Q
    |||||| || ||||| |||||||||||  | |||||| ||||||||||||||||| |||||||    
T  30395961 gattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactatttatg 30395899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 30434615 - 30434493
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaat 301  Q
    ||||| |||||||||| || |||||||| |||||||| || |||||| ||||| | ||   || ||||||| |  ||| ||| ||||| || |||||||     
T  30434615 gattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaac 30434516  T
Q  302 aggagaggactgggacaagatag 324  Q
    ||| ||||| |||||||||||||    
T  30434515 aggggaggattgggacaagatag 30434493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 341
Target Start/End: Complemental strand, 30474136 - 30473960
Alignment:
Q  165 cgatcccttcgaaccatggagattgctttctgtgaaagattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatg 264  Q
    ||||| |||||||| || || |||| ||  |||| | ||||||||| ||| || |||  |||||  |||||||| ||||||||| || ||| ||||   |    
T  30474136 cgatctcttcgaactattgatattggttattgtggaggattgagatcctttcccgaatctattcaacacctcacttcacttgagtttttgaaaattcgag 30474037  T
Q  265 gttgcccagctgtaagggagcgatgtaaggagggaataggagaggactgggacaagatagaacacattcctaaatta 341  Q
    |||||||| |  ||| ||||||||  ||| | ||||  || |||||||||||||||||||  |||||||| ||||||    
T  30474036 gttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcacattccaaaatta 30473960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 30678543 - 30678595
Alignment:
Q  195 tgtgaaagattgagatgcttgccagaaggtattcggcacctcacatcacttga 247  Q
    |||||| ||||| |||||||||| || |||||||| ||||||||||| |||||    
T  30678543 tgtgaaggattgcgatgcttgccggagggtattcgacacctcacatctcttga 30678595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 52350687 - 52350549
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaat 301  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| ||||| |||| || ||||||| |  ||| |||||||||||| || ||||     
T  52350687 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 52350588  T
Q  302 aggagaggactgggacaagatagaacacattcctaaatt 340  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  52350587 aggggaggactatgacaaaatagcgcacattccaaaatt 52350549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 347
Target Start/End: Original strand, 20303939 - 20304083
Alignment:
Q  202 gattgagatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaat 301  Q
    |||||||||||||||| |||||||||||   |||||| |||||||||||| |||  |||||||  |||||| |  ||| ||| || || |||  |||||     
T  20303939 gattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaac 20304038  T
Q  302 aggagaggactgggacaagatagaacacattcctaaattatatatt 347  Q
    ||| ||||| | |||||||||||  || ||||| ||||||||||||    
T  20304039 aggcgagga-ttggacaagatagcgcatattccaaaattatatatt 20304083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 26706050 - 26705895
Alignment:
Q  208 gatgcttgccagaaggtattcggcacctcacatcacttgaggttctgacaatttatggttgcccagctgtaagggagcgatgtaaggagggaataggaga 307  Q
    ||||||||||||| |||||||| |||||||| || |||||| |||||| |||||   |||||||| |  ||  ||| ||||| || ||||||| ||| ||    
T  26706050 gatgcttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacagggga 26705951  T
Q  308 ggactgggacaagatagaacacattcctaaattatatattaattagactgaagaag 363  Q
    ||| |||||||||||||  || ||||| ||| || | ||| |||||| ||||||||    
T  26705950 ggattgggacaagatagctcatattccaaaaataaagatttattagaatgaagaag 26705895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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