View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_15 (Length: 407)
Name: NF10125_low_15
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 3416572 - 3416406
Alignment:
| Q |
18 |
aatctaatttcttcacaataggtgtggcaagtcattgaagtcacctggnnnnnnnnnaaagatcctggaatttatttcaaagttagaaaatgagagtttt |
117 |
Q |
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| T |
3416572 |
aatctaatttcttcacaataggtgtggcaagtcattgaagtcgcctggtttttttt-aaagatcctggaatttatttcaaagttagaaaatgagagtttt |
3416474 |
T |
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| Q |
118 |
acaaaaaagatatttaaagaaaaactctccatattcctacaatggggcatataaccaattctcttgac |
185 |
Q |
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| T |
3416473 |
acaaaaaagatatttaaagaaaaactctccatattcctacaatggggcatataaccaattctcttgac |
3416406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 303 - 396
Target Start/End: Complemental strand, 3416277 - 3416184
Alignment:
| Q |
303 |
gaatgacaaatgttagtaattagttgttatgttagggtttgaactcaaacctccaacttcttatcctttattttttatcaattatagctccttt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3416277 |
gaatgacaaatgttagtaattagttgttatgttagggtttgaactcaaacctccaacttcttatcctttattttttatcaattatagctccttt |
3416184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 26651197 - 26651169
Alignment:
| Q |
303 |
gaatgacaaatgttagtaattagttgtta |
331 |
Q |
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| T |
26651197 |
gaatgacaaatgttagtaattagttgtta |
26651169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 37830034 - 37830006
Alignment:
| Q |
303 |
gaatgacaaatgttagtaattagttgtta |
331 |
Q |
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| T |
37830034 |
gaatgacaaatgttagtaattagttgtta |
37830006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 366
Target Start/End: Original strand, 33117048 - 33117076
Alignment:
| Q |
338 |
ggtttgaactcaaacctccaacttcttat |
366 |
Q |
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| T |
33117048 |
ggtttgaactcaaacctccaacttcttat |
33117076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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