View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_16 (Length: 404)
Name: NF10125_low_16
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 68 - 377
Target Start/End: Original strand, 50070248 - 50070557
Alignment:
| Q |
68 |
gacacaaaaacaactagcaagcacggtcatatttagtgatgatagtagctagacttggtaaattggaggatggattagttgtaattaggattggccaaaa |
167 |
Q |
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|||||||| | |||||||||| || |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50070248 |
gacacaaagaaaactagcaagaacactcatgttcactgatgatagtagctagacttggtaaattggaggatggattagttgtaattaggattggccaaaa |
50070347 |
T |
|
| Q |
168 |
cataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtttggtatttaac |
267 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50070348 |
cataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtttggtatttaac |
50070447 |
T |
|
| Q |
268 |
tgtcgtctttccaatagaccctccatttgggccttcaaccaatttcgcttcaaatgatatcttttcaactgtctctggcaacccgactcctccaactata |
367 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50070448 |
ggtcgtctttccaatagaccctccatttgagccttcaaccaatttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactata |
50070547 |
T |
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| Q |
368 |
ctatagttat |
377 |
Q |
| |
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|||||||||| |
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| T |
50070548 |
ctatagttat |
50070557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 120 - 387
Target Start/End: Original strand, 50078703 - 50078970
Alignment:
| Q |
120 |
acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50078703 |
acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctc |
50078802 |
T |
|
| Q |
220 |
aacctccttttcaattggcttagcatctcctttggtttggtatttaactgtcgtctttccaatagaccctccatttgggccttcaaccaatttcgcttca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
50078803 |
aacctccttttcaattggcttagcatctcctttggtttggtatttaactgtcgtctttccaacagaccctccatttgagccttcaaccaatttcgcttca |
50078902 |
T |
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| Q |
320 |
aatgatatcttttcaactgtctctggcaacccgactcctccaactatactatagttatatcccaagtt |
387 |
Q |
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| T |
50078903 |
aatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtt |
50078970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 50078614 - 50078704
Alignment:
| Q |
1 |
tctcccagttgaaaagtaagaaaagaaactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcac |
91 |
Q |
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| T |
50078614 |
tctcccagttcaaaagtaagaaaagaaactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcac |
50078704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 50069988 - 50070016
Alignment:
| Q |
47 |
attacattggaagattaagaagacacaaa |
75 |
Q |
| |
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| T |
50069988 |
attacattggaagattaagaagacacaaa |
50070016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 120 - 387
Target Start/End: Original strand, 10797113 - 10797380
Alignment:
| Q |
120 |
acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10797113 |
acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctc |
10797212 |
T |
|
| Q |
220 |
aacctccttttcaattggcttagcatctcctttggtttggtatttaactgtcgtctttccaatagaccctccatttgggccttcaaccaatttcgcttca |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
10797213 |
aacctccttttcaattggcttagcatctcctttggtttggtatttaactgtcgtctttccaacagaccctccatttgagccttcaaccaatttcgcttca |
10797312 |
T |
|
| Q |
320 |
aatgatatcttttcaactgtctctggcaacccgactcctccaactatactatagttatatcccaagtt |
387 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797313 |
aatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtt |
10797380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 10797024 - 10797114
Alignment:
| Q |
1 |
tctcccagttgaaaagtaagaaaagaaactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcac |
91 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797024 |
tctcccagttcaaaagtaagaaaagaaactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcac |
10797114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 13501575 - 13501504
Alignment:
| Q |
142 |
ttagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc |
213 |
Q |
| |
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||||||||||| |||||| |||||| |||||||||| ||||||||||||| |||||||||| |||||||| |
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| T |
13501575 |
ttagttgtaatcaggattagccaaacagtaaccctcaagggccttgaaaagaccatcacccttagctttgcc |
13501504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 13515378 - 13515307
Alignment:
| Q |
142 |
ttagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc |
213 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| || |||||||||||| |||||||||| |||||||| |
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| T |
13515378 |
ttagttgtaatcaggattagccaaacagtaaccctctatagccttgaaaagaccatcacccttagctttgcc |
13515307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 13541914 - 13541874
Alignment:
| Q |
148 |
gtaattaggattggccaaaacataaccctcaatggccttga |
188 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||| |
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| T |
13541914 |
gtaattagggtttgccaaaacataaccctcaatggccttga |
13541874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 13485853 - 13485788
Alignment:
| Q |
148 |
gtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc |
213 |
Q |
| |
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||||| |||||| |||||||| ||||| |||| |||||||||||| |||||||| | |||||||| |
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| T |
13485853 |
gtaatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgcc |
13485788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 13509614 - 13509549
Alignment:
| Q |
148 |
gtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc |
213 |
Q |
| |
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||||| |||||| |||||||||||||| |||| || ||||||||| |||||||| | |||||||| |
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| T |
13509614 |
gtaatcaggatttgccaaaacataaccttcaagagctttgaaaagaccatcacccctagctttgcc |
13509549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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