View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_21 (Length: 337)
Name: NF10125_low_21
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 2795282 - 2794958
Alignment:
| Q |
13 |
catcagtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttaca |
112 |
Q |
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| T |
2795282 |
catctgtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcctgcagacgattagataaattgccaacaatctcagttaca |
2795183 |
T |
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| Q |
113 |
agagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaa |
212 |
Q |
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| T |
2795182 |
agagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaa |
2795083 |
T |
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| Q |
213 |
gaacagcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctatt |
312 |
Q |
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| T |
2795082 |
gaacagcaacattggtttttccagcaccagttggagcacaaagtaaaagattatccgatttaaacagagcagtctcatataccttgctctgcactctatt |
2794983 |
T |
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| Q |
313 |
caattgtatcattcctttgaaggct |
337 |
Q |
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| T |
2794982 |
caattgtatcattcctttgaaggct |
2794958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 26 - 333
Target Start/End: Complemental strand, 29262782 - 29262475
Alignment:
| Q |
26 |
gttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttacaagagctttcatag |
125 |
Q |
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| T |
29262782 |
gttagtgactggtctccactaagctccctaaccgtaacattatagtcctgcaaccgattagacaaattcccaacaacctccgccacaagagctttcattg |
29262683 |
T |
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| Q |
126 |
gcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagcaacatt |
225 |
Q |
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| T |
29262682 |
gtgcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagtaagaacagcaacatt |
29262583 |
T |
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| Q |
226 |
ggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaattgtatcatt |
325 |
Q |
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| T |
29262582 |
cgtttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagagagcagtttcataaaccttgctctgaactctattcaactgtgtcatt |
29262483 |
T |
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| Q |
326 |
cctttgaa |
333 |
Q |
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|||||||| |
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| T |
29262482 |
cctttgaa |
29262475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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