View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_low_23 (Length: 316)

Name: NF10125_low_23
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_low_23
NF10125_low_23
[»] chr3 (30 HSPs)
chr3 (17-304)||(46491011-46491298)
chr3 (77-192)||(46480210-46480325)
chr3 (74-193)||(51944306-51944425)
chr3 (86-177)||(46498380-46498471)
chr3 (82-186)||(46506843-46506952)
chr3 (88-185)||(47413797-47413894)
chr3 (73-193)||(5160693-5160813)
chr3 (89-180)||(46553795-46553886)
chr3 (73-191)||(46474341-46474459)
chr3 (88-180)||(46532342-46532434)
chr3 (231-294)||(5156566-5156629)
chr3 (73-180)||(5156674-5156781)
chr3 (89-180)||(46544913-46545004)
chr3 (73-175)||(46484474-46484576)
chr3 (79-179)||(46236382-46236482)
chr3 (226-294)||(46498266-46498334)
chr3 (123-178)||(46539443-46539498)
chr3 (232-294)||(5160595-5160657)
chr3 (238-304)||(46480098-46480164)
chr3 (105-177)||(46526031-46526103)
chr3 (79-180)||(46535370-46535471)
chr3 (111-186)||(16025901-16025976)
chr3 (232-294)||(46526167-46526229)
chr3 (79-177)||(46548602-46548700)
chr3 (249-294)||(46548765-46548810)
chr3 (238-286)||(4581139-4581187)
chr3 (238-286)||(4613596-4613644)
chr3 (123-180)||(4581015-4581072)
chr3 (241-286)||(46236545-46236590)
chr3 (238-286)||(46484366-46484414)
[»] chr4 (4 HSPs)
chr4 (82-186)||(15556432-15556536)
chr4 (89-183)||(35155835-35155929)
chr4 (229-286)||(35162764-35162821)
chr4 (229-286)||(35155744-35155801)
[»] chr7 (7 HSPs)
chr7 (76-178)||(17736950-17737052)
chr7 (78-178)||(17718537-17718637)
chr7 (88-178)||(17699604-17699694)
chr7 (78-178)||(17708713-17708813)
chr7 (78-178)||(17736367-17736467)
chr7 (88-178)||(16722590-16722680)
chr7 (78-169)||(16730588-16730679)
[»] chr8 (5 HSPs)
chr8 (79-190)||(9675300-9675411)
chr8 (79-190)||(9692322-9692433)
chr8 (240-286)||(21463943-21463989)
chr8 (88-177)||(21463785-21463874)
chr8 (238-286)||(9692469-9692517)
[»] chr2 (2 HSPs)
chr2 (79-182)||(20168618-20168721)
chr2 (79-182)||(20359563-20359666)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 46491298 - 46491011
Alignment:
Q  17 acatcatattgtcaggaaaaataaattccctatttatctattggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491298 acatcatattgtcaggaaaaataaattccctatttatctattggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaag 46491199  T
Q  117 atgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcatta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||    
T  46491198 atgattgttccagtcaattcttctctaatcataaacaagaaagggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaata 46491099  T
Q  217 cttcagttacggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacacaggtt 304  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  46491098 cttcagttgcggtggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatattttagaaatacataggtt 46491011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 46480325 - 46480210
Alignment:
Q  77 aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46480325 aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaag 46480226  T
Q  177 tctagtcgagttggaa 192  Q
    ||||| |||| |||||    
T  46480225 tctagccgaggtggaa 46480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 51944425 - 51944306
Alignment:
Q  74 ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctaca 173  Q
    |||| ||||||| | ||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  51944425 ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctaca 51944326  T
Q  174 aagtctagtcgagttggaaa 193  Q
    ||||||||| ||| ||||||    
T  51944325 aagtctagttgagatggaaa 51944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 46498471 - 46498380
Alignment:
Q  86 agcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    |||||||||||||| |||||| |||||||||| ||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  46498471 agcaagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagt 46498380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 46506843 - 46506952
Alignment:
Q  82 acccagcaagaggattgaacacctgtccaacaaa-----gatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 176  Q
    |||||||||||||||||| |||||||||||||||     || ||||||||| ||| | |||||| |||| | ||| ||||| ||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaattaaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaag 46506942  T
Q  177 tctagtcgag 186  Q
    ||||||||||    
T  46506943 tctagtcgag 46506952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 47413797 - 47413894
Alignment:
Q  88 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcga 185  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||  | ||||||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcga 47413894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 5160813 - 5160693
Alignment:
Q  73 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 172  Q
    ||||| ||||| || ||||||||||||  || |||||||||||||  || ||||||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  5160813 gctaagatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T
Q  173 aaagtctagtcgagttggaaa 193  Q
     || || ||  ||||||||||    
T  5160713 gaaatcaagctgagttggaaa 5160693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 46553795 - 46553886
Alignment:
Q  89 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 180  Q
    |||||||||||  || || ||||||||||  ||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  46553795 aagaggattgagaacttggccaacaaagagtattgtaccagacaaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 46474459 - 46474341
Alignment:
Q  73 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 172  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||| || |||||||| | | | ||||| ||||| ||| ||||    
T  46474459 gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatcaactac 46474360  T
Q  173 aaagtctagtcgagttgga 191  Q
    ||| || | ||||||||||    
T  46474359 aaaatccattcgagttgga 46474341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 46532434 - 46532342
Alignment:
Q  88 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 180  Q
    |||||||||||| ||| || ||||||||||  ||||| |||| ||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  46532434 caagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtcta 46532342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 5156629 - 5156566
Alignment:
Q  231 gctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 294  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5156629 gctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaa 5156566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 5156781 - 5156674
Alignment:
Q  73 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 172  Q
    ||||| ||||| || |||| ||||||| ||| |||||||||||||  || ||||||||| | | ||||||||| | ||| ||||||||||| ||||||||    
T  5156781 gctaagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctac 5156682  T
Q  173 aaagtcta 180  Q
    ||||||||    
T  5156681 aaagtcta 5156674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 46545004 - 46544913
Alignment:
Q  89 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 180  Q
    |||||||||||  || ||||||| |||||  |  ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  46545004 aagaggattgagaacttgtccaataaagagtaccgttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 46484576 - 46484474
Alignment:
Q  73 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 172  Q
    ||||| |||||||| ||||| |||| | ||| ||||||||||||||||||||||||| ||| || |||||||| | | | ||||| ||||| ||||||||    
T  46484576 gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaattagatataagaatgggtgatcagctac 46484477  T
Q  173 aaa 175  Q
    |||    
T  46484476 aaa 46484474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 46236382 - 46236482
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||| ||| ||| |||||||| |||||||||| |||||| ||||||||| ||| |  |||||||||| | ||| | ||||||||| ||||||||||||||    
T  46236382 atcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtc 46236481  T
Q  179 t 179  Q
    |    
T  46236482 t 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 46498334 - 46498266
Alignment:
Q  226 cggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 294  Q
    ||||||| ||| |||||| |||||||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  46498334 cggtggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaa 46498266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 46539498 - 46539443
Alignment:
Q  123 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  46539498 gttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 5160657 - 5160595
Alignment:
Q  232 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 294  Q
    ||||||||||||| |  |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5160657 ctgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaa 5160595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 46480164 - 46480098
Alignment:
Q  238 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacacaggtt 304  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||| ||| |||||    
T  46480164 cagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggtt 46480098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 46526031 - 46526103
Alignment:
Q  105 tgtccaacaaagatgatt-gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| ||||||| ||||||||||    
T  46526031 tgtccaacaaagaggatttgttccagtcaaatcttctctaattagaaacaagaaa-ggtggtctgctacaaagt 46526103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 46535471 - 46535370
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||| ||||||||||||||   ||| || |||||||||   ||||| ||||  || |||||||| |||| |||||||||||| |||||||||||||||||    
T  46535471 atcatccagcaagaggattatgcacttgcccaacaaagtgtattgtaccagataaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtc 46535372  T
Q  179 ta 180  Q
    ||    
T  46535371 ta 46535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 16025976 - 16025901
Alignment:
Q  111 acaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgag 186  Q
    ||||||| ||||||| | || || ||||||||||| | ||| ||||||||||||||||||||||| |||| |||||    
T  16025976 acaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgag 16025901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 46526167 - 46526229
Alignment:
Q  232 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 294  Q
    ||||| |||||||||||||| | |||||||| ||||| | |||||||||||||||||| ||||    
T  46526167 ctgcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaa 46526229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 46548602 - 46548700
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    |||||||| ||| |||||||| ||| ||||||| |||||  || |||||||   | |||||| | |||||||||| |||||| ||||||||||||||||    
T  46548602 atcacccaacaaaaggattgagcacttgtccaataaagagtatagttccagaagaatcttctttgatcataaacatgaaaggatggtcagctacaaagt 46548700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 46548765 - 46548810
Alignment:
Q  249 ccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 294  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  46548765 ccttcttcttttacttcaatgaaagacttgtgaaatattttagaaa 46548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 4581139 - 4581187
Alignment:
Q  238 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4581139 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 4613596 - 4613644
Alignment:
Q  238 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4613596 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4613644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 4581015 - 4581072
Alignment:
Q  123 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 180  Q
    ||||||| ||| |||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  4581015 gttccagacaaatcttctcggatcaaaaacaagaaagggtggtcagccacaaattcta 4581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 46236545 - 46236590
Alignment:
Q  241 cttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  46236545 cttcagtgccttcttcatttacttcaatgaaagatttgtgaaatat 46236590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 46484414 - 46484366
Alignment:
Q  238 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||| |||||    
T  46484414 cagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatat 46484366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 15556536 - 15556432
Alignment:
Q  82 acccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctag 181  Q
    ||||||||| |||||| | ||||||||||||||||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||||||||||||||||    
T  15556536 acccagcaaaaggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctag 15556437  T
Q  182 tcgag 186  Q
    |||||    
T  15556436 tcgag 15556432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 35155929 - 35155835
Alignment:
Q  89 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtc 183  Q
    |||||| |||||||| |||||  |||||| |||||||   ||||| ||||||||||| | ||| ||||||||||| ||||||| |||||||||||    
T  35155929 aagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtc 35155835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 35162821 - 35162764
Alignment:
Q  229 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    |||||||| ||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  35162821 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatat 35162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 35155801 - 35155744
Alignment:
Q  229 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  35155801 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 35155744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 17737052 - 17736950
Alignment:
Q  76 aaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaa 175  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||    
T  17737052 aaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T
Q  176 gtc 178  Q
    |||    
T  17736952 gtc 17736950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 17718637 - 17718537
Alignment:
Q  78 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||||    
T  17718637 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 17718538  T
Q  178 c 178  Q
    |    
T  17718537 c 17718537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 17699694 - 17699604
Alignment:
Q  88 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||||||||||||    
T  17699694 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 17699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 17708813 - 17708713
Alignment:
Q  78 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17708813 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17708714  T
Q  178 c 178  Q
    |    
T  17708713 c 17708713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 17736467 - 17736367
Alignment:
Q  78 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17736467 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17736368  T
Q  178 c 178  Q
    |    
T  17736367 c 17736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 16722680 - 16722590
Alignment:
Q  88 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| ||||||||    
T  16722680 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 16722590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 16730679 - 16730588
Alignment:
Q  78 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagc 169  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||    
T  16730679 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 9675300 - 9675411
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9675300 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9675399  T
Q  179 tagtcgagttgg 190  Q
    || || ||||||    
T  9675400 tattccagttgg 9675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 9692322 - 9692433
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    |||||||| ||||||||||||  ||||||||  |||||||||| |||   ||||| ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9692322 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9692421  T
Q  179 tagtcgagttgg 190  Q
    || || ||||||    
T  9692422 tattccagttgg 9692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 21463943 - 21463989
Alignment:
Q  240 gcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||    
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatat 21463989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 21463785 - 21463874
Alignment:
Q  88 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 177  Q
    |||||||||||| ||| || |||| |||||  || ||||| | ||| |||||||| |||| ||||||||||||||| |||||||| ||||    
T  21463785 caagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 9692469 - 9692517
Alignment:
Q  238 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 286  Q
    ||||||| |||||||| || ||||| ||||| |||||||||||||||||    
T  9692469 cagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatat 9692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 20168618 - 20168721
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20168618 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20168717  T
Q  179 tagt 182  Q
    ||||    
T  20168718 tagt 20168721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 20359666 - 20359563
Alignment:
Q  79 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 178  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20359666 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20359567  T
Q  179 tagt 182  Q
    ||||    
T  20359566 tagt 20359563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University