View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_24 (Length: 315)
Name: NF10125_low_24
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 70 - 278
Target Start/End: Original strand, 4782593 - 4782801
Alignment:
| Q |
70 |
cttttgaattaggaaaaagagtggtttcctatccacaaccataattatgtgatcctaaaggattcccatagtgatcctttgacatttcaaagtagttgat |
169 |
Q |
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| T |
4782593 |
cttttgaattaggaaaaagagtggtttcctatccacaaccataattatgtgatcctaaaggattcccatagtgatcctttgacatttcaaagtagttgat |
4782692 |
T |
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| Q |
170 |
tccatgaatagtctctagtgtggtttcgtagaaatttccttcctgcttctcaatgaatataacaataaatacatgcaatctgtagtgtctcaaaagtcat |
269 |
Q |
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| T |
4782693 |
tccatgaatagtctctagtgtggtttcgtagaaatttccttcctgcttctcaatgaatataacaataaatacatgcaatctgtagtgtctcaaaagtcat |
4782792 |
T |
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| Q |
270 |
cacaagaag |
278 |
Q |
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||||||||| |
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| T |
4782793 |
cacaagaag |
4782801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 70 - 278
Target Start/End: Original strand, 4815019 - 4815230
Alignment:
| Q |
70 |
cttttgaattaggaaaaagagtggtttcctatccacaaccataattatgtgatcctaaag--gattcccatagtgatcctttgac-atttcaaagtagtt |
166 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
4815019 |
cttttgaattaggaaaaagagtggcttcctatccacaaccacaattatgtgatcctaaagcggattctcatagtgatcctttgaccatttcaaagtagtt |
4815118 |
T |
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| Q |
167 |
gattccatgaatagtctctagtgtggtttcgtagaaatttccttcctgcttctcaatgaatataacaataaatacatgcaatctgtagtgtctcaaaagt |
266 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
4815119 |
gattccatgagtagtctctagtgtggtttcgtagaaatttccttcctgcctctcaatgaaaataacaataaatacatgcaatttgtagtgtctcaaaagt |
4815218 |
T |
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| Q |
267 |
catcacaagaag |
278 |
Q |
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||||||| |||| |
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| T |
4815219 |
catcacaggaag |
4815230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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