View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_29 (Length: 286)
Name: NF10125_low_29
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_29 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6522196 - 6522479
Alignment:
| Q |
1 |
gcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactat |
100 |
Q |
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| T |
6522196 |
gcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactat |
6522295 |
T |
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| Q |
101 |
atctttgatatattaaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgtt |
200 |
Q |
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| T |
6522296 |
atctttgatatattaaatatttaatgtctcact--gtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgtt |
6522393 |
T |
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| Q |
201 |
gatgatgattttattgtgttcattgttatcatctttttgatcaattaagaacaaggaaagccaaggaaataatttgaatgtactac |
286 |
Q |
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| T |
6522394 |
gatgttgattttattgtgttcattgttatcatctttttgatcaattaagaacaaggaaagccaaggaaataatttgaatgtactac |
6522479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
9 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
72 |
Q |
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| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
9 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
72 |
Q |
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| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
9 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
72 |
Q |
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| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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