View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_31 (Length: 276)
Name: NF10125_low_31
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 25813330 - 25813541
Alignment:
| Q |
64 |
caatatcaattgacacaacttttcataccaaacgtattgattgataatcaacaatcaagtccttaatt---------ataaaactataaaatgtatccat |
154 |
Q |
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| T |
25813330 |
caatatcaactgacacaatttttcataccaaacgtattgattgataatcaacaatcaagtcgttaattctctgacttataaaactataaaatgtatccat |
25813429 |
T |
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| Q |
155 |
catataacaactttcacacataaaaaagataaccctgcagaagcaaacttcaatcaaatatatttttgtagttgaaataaaccaccaaaacaatatgctt |
254 |
Q |
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| T |
25813430 |
catataacaactttcacacataaaaaagataaccctgcagaagcaaacttcactcaaatata-ttttgtaggtgaaataaaccaccaaaacaatatgctt |
25813528 |
T |
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| Q |
255 |
ccagaactctctg |
267 |
Q |
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| T |
25813529 |
ccagaactctctg |
25813541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 25813211 - 25813272
Alignment:
| Q |
5 |
gcataggttcacattaaattattttttaacagaaacaattacaccttctcatgagggtacaa |
66 |
Q |
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| T |
25813211 |
gcataggttcacattaaattattttttaacagaaacaattacaccttctcatgagggtacaa |
25813272 |
T |
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