View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_35 (Length: 269)
Name: NF10125_low_35
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 12652997 - 12652753
Alignment:
| Q |
8 |
aagcagagaagcactaatatcagaaattgatctcccttcatttaaatggcatcaagtcacataatttcaaacaaatcgcaaaatagaaaataggctacat |
107 |
Q |
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| T |
12652997 |
aagcaaagaagcactaatatcagaaattgatctcccttcatttaaatggcatcaagtcacataatttcgaacaaatcgcaaaatagaaaataggctacat |
12652898 |
T |
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| Q |
108 |
gacagaagtcagaaactaataagcacaataattgctgcaacattagtaaataaaatagaggtcattgaattcaatcaaaataaaataacattaatacaat |
207 |
Q |
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| T |
12652897 |
gacagaagtcagaaactaataagcacaataattgctgcaacattagtaaataaaatagaggtcattgaattcaatcaaaataaaataacattaatacaat |
12652798 |
T |
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| Q |
208 |
ggaaatagatgccagagcaatatgcaaataaaaagagattgaagc |
252 |
Q |
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| T |
12652797 |
ggaaatagatgccagagcaatatgcaaatcaaaagagattgaagc |
12652753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 12647687 - 12647555
Alignment:
| Q |
36 |
gatctcccttcatttaaatggcatcaagtcacataatttcaaacaaatcgcaaaatagaaaataggctacatgacag-aagtcagaaactaataagcaca |
134 |
Q |
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| T |
12647687 |
gatctcccttcatttaattggcatcaagtaacagaatttcgaacaaatcgcaaaatagaaaataggctacataacagaaagttggaaactaataagcaca |
12647588 |
T |
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| Q |
135 |
ataattgctgcaacattagtaaataaaatagag |
167 |
Q |
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| T |
12647587 |
ataattgctgcaacattagtaaataaaatagag |
12647555 |
T |
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