View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_38 (Length: 260)
Name: NF10125_low_38
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 2963548 - 2963297
Alignment:
| Q |
1 |
ctaaaaattgctataacaaccaaacaacaatcaannnnnnnnnnnnaagcgttacacattgatacaggataacataggaatttacattgataataccacg |
100 |
Q |
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| T |
2963548 |
ctaaaaattgctataacaaccaaacaacaatcaattttttttt---aagcgttacacattgatacaggataacataggaatttacattgataataccacg |
2963452 |
T |
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| Q |
101 |
tatttcaaagttatacattt-gattaagtcatag-tacatcatgattacaggattacataaagttgctcccataaagtttacaaaaaattaattacaaga |
198 |
Q |
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| T |
2963451 |
tatttcaaagttatacattttgattaagtcataggtacatcatgattacaggattatataaagttgctcccataaagtttacaaaaaattaattacaaga |
2963352 |
T |
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| Q |
199 |
gcaacattttaggctaatcatcgatatcaaacttcctttgcctttacctttgctt |
253 |
Q |
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| T |
2963351 |
gtaacattttaggctaatcatcgatatcaaacttcctttgcctttacccttgctt |
2963297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 2942752 - 2942611
Alignment:
| Q |
113 |
atacatttgattaagtcatag-tacatcatgattacaggattacataaagttgctcccataaagtttacaaaaaattaattacaagagcaacattttagg |
211 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2942752 |
atacatttgattaagtcataggtacatcatgattaagggattacataaagttgctcccataaagtttacaaaaaattaattacaagagtaacattttagg |
2942653 |
T |
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| Q |
212 |
ctaatcatcgatatcaaacttcctttgcctttacctttgctt |
253 |
Q |
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| T |
2942652 |
ctaatcatcgatatcaaacttcctttgcctttacccttgctt |
2942611 |
T |
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