View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_low_40 (Length: 256)

Name: NF10125_low_40
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_low_40
NF10125_low_40
[»] chr1 (27 HSPs)
chr1 (5-242)||(26991682-26991922)
chr1 (5-242)||(30627041-30627281)
chr1 (5-242)||(49650061-49650301)
chr1 (5-242)||(35718743-35718983)
chr1 (5-235)||(45467897-45468130)
chr1 (18-242)||(47675797-47676012)
chr1 (56-225)||(23082424-23082596)
chr1 (5-130)||(12705215-12705341)
chr1 (56-194)||(6597457-6597598)
chr1 (62-197)||(46688711-46688848)
chr1 (102-225)||(22767176-22767302)
chr1 (170-247)||(12705129-12705206)
chr1 (92-157)||(39092971-39093036)
chr1 (56-201)||(13003794-13003947)
chr1 (167-232)||(50011410-50011476)
chr1 (56-201)||(42762261-42762407)
chr1 (62-126)||(38790605-38790669)
chr1 (144-201)||(16255147-16255207)
chr1 (122-183)||(28522845-28522909)
chr1 (78-155)||(2356249-2356326)
chr1 (77-130)||(37586495-37586548)
chr1 (101-157)||(50011641-50011697)
chr1 (71-130)||(44343422-44343481)
chr1 (171-232)||(10472374-10472436)
chr1 (170-242)||(18898058-18898130)
chr1 (167-196)||(37586460-37586489)
chr1 (163-199)||(23655162-23655198)
[»] chr4 (31 HSPs)
chr4 (5-242)||(12191466-12191708)
chr4 (5-242)||(51175468-51175708)
chr4 (5-187)||(44991729-44991914)
chr4 (5-233)||(38068451-38068686)
chr4 (5-228)||(40445709-40445923)
chr4 (62-242)||(38068089-38068272)
chr4 (62-242)||(13678530-13678713)
chr4 (15-242)||(31767749-31767963)
chr4 (15-201)||(45832080-45832265)
chr4 (62-220)||(38168066-38168227)
chr4 (56-225)||(36904169-36904341)
chr4 (62-242)||(5744711-5744894)
chr4 (71-201)||(17058764-17058897)
chr4 (56-157)||(27064449-27064550)
chr4 (56-157)||(27085553-27085654)
chr4 (5-126)||(32409462-32409583)
chr4 (101-242)||(39720248-39720392)
chr4 (61-201)||(56397040-56397182)
chr4 (62-199)||(4711591-4711727)
chr4 (62-192)||(37450822-37450955)
chr4 (37-96)||(39719039-39719098)
chr4 (179-242)||(44991215-44991278)
chr4 (62-140)||(30482930-30483008)
chr4 (56-160)||(56228196-56228299)
chr4 (62-133)||(13665785-13665856)
chr4 (56-138)||(19853989-19854071)
chr4 (167-201)||(44516220-44516254)
chr4 (172-201)||(51968066-51968095)
chr4 (92-242)||(53096248-53096403)
chr4 (144-199)||(32409575-32409633)
chr4 (173-201)||(39629172-39629200)
[»] chr7 (23 HSPs)
chr7 (5-228)||(2842504-2842730)
chr7 (5-242)||(48557904-48558143)
chr7 (5-233)||(584012-584243)
chr7 (5-219)||(44592042-44592259)
chr7 (64-242)||(8488621-8488801)
chr7 (5-242)||(8515454-8515689)
chr7 (62-233)||(17503160-17503335)
chr7 (62-233)||(17549879-17550054)
chr7 (62-242)||(1837762-1837945)
chr7 (15-130)||(43786638-43786753)
chr7 (56-233)||(48767841-48768022)
chr7 (56-199)||(25173475-25173621)
chr7 (126-225)||(43788592-43788694)
chr7 (56-194)||(27399757-27399898)
chr7 (62-242)||(19735635-19735820)
chr7 (64-232)||(38974730-38974900)
chr7 (56-233)||(8055220-8055401)
chr7 (71-157)||(8352662-8352748)
chr7 (57-201)||(21294837-21294984)
chr7 (56-201)||(48293989-48294137)
chr7 (142-201)||(19735864-19735926)
chr7 (62-126)||(1964227-1964291)
chr7 (56-149)||(31306035-31306127)
[»] chr5 (14 HSPs)
chr5 (15-242)||(8516833-8517063)
chr5 (83-240)||(15958648-15958808)
chr5 (55-201)||(31066280-31066429)
chr5 (55-194)||(31046345-31046487)
chr5 (56-242)||(565348-565541)
chr5 (64-240)||(2553196-2553375)
chr5 (56-199)||(12883133-12883279)
chr5 (162-233)||(42075953-42076025)
chr5 (56-196)||(4396216-4396358)
chr5 (56-161)||(30312956-30313061)
chr5 (56-126)||(30350411-30350481)
chr5 (166-241)||(15491038-15491113)
chr5 (162-195)||(1922924-1922957)
chr5 (137-201)||(4740390-4740457)
[»] chr3 (26 HSPs)
chr3 (15-199)||(55222353-55222540)
chr3 (56-242)||(1151503-1151692)
chr3 (5-242)||(5992110-5992339)
chr3 (106-242)||(1294572-1294711)
chr3 (56-242)||(31833952-31834141)
chr3 (48-199)||(19611134-19611289)
chr3 (62-242)||(23059105-23059288)
chr3 (8-129)||(3935767-3935888)
chr3 (71-242)||(32552316-32552490)
chr3 (62-225)||(25701479-25701646)
chr3 (105-201)||(48098387-48098488)
chr3 (56-201)||(1559537-1559685)
chr3 (62-155)||(47142758-47142851)
chr3 (102-192)||(38585978-38586071)
chr3 (65-161)||(13778185-13778280)
chr3 (95-159)||(30732963-30733027)
chr3 (76-201)||(28131340-28131469)
chr3 (163-242)||(35539780-35539859)
chr3 (62-116)||(7325563-7325617)
chr3 (162-201)||(7325507-7325546)
chr3 (62-232)||(14903368-14903532)
chr3 (141-201)||(1291971-1292034)
chr3 (78-147)||(37526766-37526835)
chr3 (65-154)||(46981833-46981922)
chr3 (173-201)||(35539707-35539735)
chr3 (167-199)||(52393753-52393785)
[»] chr8 (16 HSPs)
chr8 (15-233)||(1581441-1581663)
chr8 (5-201)||(14523119-14523318)
chr8 (5-192)||(12532285-12532475)
chr8 (56-233)||(7176976-7177157)
chr8 (101-242)||(5423516-5423660)
chr8 (56-242)||(22800479-22800672)
chr8 (5-126)||(43976586-43976707)
chr8 (144-242)||(43976699-43976800)
chr8 (64-201)||(12795889-12796029)
chr8 (58-201)||(13282124-13282273)
chr8 (144-225)||(42374296-42374380)
chr8 (56-157)||(11989712-11989813)
chr8 (103-201)||(11767772-11767873)
chr8 (167-201)||(38230331-38230365)
chr8 (167-201)||(40214485-40214519)
chr8 (13-61)||(42373924-42373972)
[»] chr2 (21 HSPs)
chr2 (5-201)||(10624768-10624967)
chr2 (15-219)||(28967527-28967737)
chr2 (56-246)||(21848130-21848324)
chr2 (56-242)||(3703396-3703585)
chr2 (5-242)||(12184677-12184902)
chr2 (71-242)||(44059274-44059449)
chr2 (5-242)||(14332256-14332489)
chr2 (63-225)||(12863506-12863671)
chr2 (62-242)||(27559035-27559218)
chr2 (62-232)||(37847691-37847864)
chr2 (101-201)||(39446361-39446462)
chr2 (62-201)||(2968803-2968945)
chr2 (125-242)||(36750935-36751055)
chr2 (62-242)||(37456046-37456229)
chr2 (65-201)||(42029540-42029671)
chr2 (62-161)||(25749871-25749969)
chr2 (56-201)||(12671782-12671930)
chr2 (5-82)||(36749910-36749987)
chr2 (79-134)||(20680468-20680523)
chr2 (102-225)||(11916111-11916233)
chr2 (173-201)||(37347815-37347843)
[»] chr6 (12 HSPs)
chr6 (102-242)||(17095930-17096073)
chr6 (62-200)||(29465247-29465388)
chr6 (62-197)||(27753062-27753200)
chr6 (56-197)||(6812048-6812191)
chr6 (8-95)||(17096442-17096529)
chr6 (88-232)||(5693795-5693934)
chr6 (62-197)||(12919071-12919209)
chr6 (63-126)||(19687610-19687673)
chr6 (61-152)||(31766425-31766515)
chr6 (170-242)||(21447757-21447829)
chr6 (170-242)||(10364307-10364380)
chr6 (162-194)||(3863673-3863705)
[»] scaffold0568 (1 HSPs)
scaffold0568 (71-201)||(697-830)
[»] scaffold0020 (1 HSPs)
scaffold0020 (54-201)||(11427-11576)
[»] scaffold0086 (1 HSPs)
scaffold0086 (63-161)||(33219-33317)
[»] scaffold0110 (2 HSPs)
scaffold0110 (78-152)||(13690-13764)
scaffold0110 (78-152)||(21427-21501)
[»] scaffold0040 (1 HSPs)
scaffold0040 (173-201)||(59717-59745)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 26991922 - 26991682
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| || ||||||||||| | ||||||| |||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  26991922 cataaaagagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatat 26991823  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||||||| |||| |||    
T  26991822 ttaagtacttttcattggagtccttattagtgtattgttattggagtcattgagtccttaatgggtacttttattaaaaaattataaataagtgatatgt 26991723  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||| |||||||||||||||||||| |||  ||||||||    
T  26991722 cacgtgaggtccatttaaagagtccttgttaaggaactacc 26991682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 30627281 - 30627041
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||||||||||||||| || ||||    
T  30627281 cataaaggaataataaaatgtgtactacttggtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatat 30627182  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||| ||| ||||| ||||||||||||||| |||||||||||| |||||   ||| ||| ||||||||||||||||||||||| |||||| |    
T  30627181 ttaagtatttttcatttgagtctttattaatgtattgtcattggagtcattaagtccttaataggtacttttattaaaaaattataaataagtgatgtat 30627082  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||||| ||||||||| ||||| || |||||||||||||    
T  30627081 cacgtgggatccatttaaggagtcattgttagagaactacc 30627041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 49650061 - 49650301
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| || ||||||||||| | ||||||| |||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||    
T  49650061 cataaatgagtaataaaatgtgtactacttggtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatgatgtaaagatagtgagacatat 49650160  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||| |||| |||    
T  49650161 ttaagtacttttcattggagtccttattaatgtattgttattggagtcattgagtccttaataagtacttttattaaaaaattataaataagtgatttgt 49650260  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||| ||| |||||||  ||||||| |||  ||||||||    
T  49650261 cacgtgaggttcatttaagaagtccttgttatggaactacc 49650301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 35718983 - 35718743
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| || ||||||||||| | ||||||| |||||||| |||||| ||||||||  ||||||| ||||||||||| | ||||||||||||||| ||||    
T  35718983 cataaatgagtaataaaatgtgtactacttggtcccacttgtaaaaaagagtaataagtaaattatttttgtttaataaagtaaagatagtgagacatat 35718884  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| ||||| |||||| ||| |||||||  |||||||||||| |||||   |||  |||||||||||||||||||||||||| ||| ||||    
T  35718883 ttaagtacttttcattggggtccttgttagtgtattgccattggagtcattaagtccttaatagatatttttattaaaaaattataaataagtgacgtgt 35718784  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||||||||||||||| ||||| || |||  ||||||||    
T  35718783 cacgtggggtccatttaaggagtcattgttaaggaactacc 35718743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 45468130 - 45467897
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||| | |||||| | |||||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||    
T  45468130 cataaaggagtaataaaatgtgtactactcggtcccacctgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatat 45468031  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||| ||||||| ||||||||| |||| | |||||||| |||||||||||| | |||   ||| ||| |||||||||||| ||||||| || ||||||||    
T  45468030 ttaaatatttttcattggagtcattatcagtgtattgtcattggagtcattaaatccttaataggtacttttattaaaaatttataaacaagtgatgtgt 45467931  T
Q  202 tccgtggggtccatttaaagagtccttattagag 235  Q
      |||||||||||||||| ||||| || ||||||    
T  45467930 ctcgtggggtccatttaaggagtcattgttagag 45467897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 47676012 - 47675797
Alignment:
Q  18 taaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtatttttt 117  Q
    |||||||| | |||||||||||||||| |||||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||||||||     
T  47676012 taaaatgtgtactacttgatcccacttgtaaaaaggagtaataggtaaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttc 47675913  T
Q  118 attggagtccttattaatgtattgttattggagtcattgagtccataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccattt 217  Q
    |||| ||   |  ||| |||||||| ||| ||||| ||      |||| || ||||||||||||||||||||||||| ||||||   || ||||||||||    
T  47675912 attgaag---tatttagtgtattgtcatt-gagtcctt-----aataaatacttttattaaaaaattataaataaataatgtgtcatgtagggtccattt 47675822  T
Q  218 aaagagtccttattagagaactacc 242  Q
    || |||||||| |||||||||||||    
T  47675821 aatgagtccttgttagagaactacc 47675797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 23082424 - 23082596
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||| ||||||| ||||||  | ||||||||||||||| |||||||||||||||| |||| |   ||||||| ||||    
T  23082424 taataaataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgtactcccattggagccatt 23082523  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtc 225  Q
    || |||   ||||||| ||||||||||| ||||||||||||||||||||  | || ||||||||||| |||||    
T  23082524 gaatccttgataagtacttttattaaaatattataaataaatgatgtgtaacatgaggtccatttaatgagtc 23082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 12705341 - 12705215
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaatttt-gtttaatgatgtaaagatagtgagatata 103  Q
    ||||||||| ||||||||||| | ||| ||| |||||||| |||||||||||||||  ||||||| |||| |||||||||||||| |||||||||| |||    
T  12705341 cataaaggagtaataaaatgtgtactatttggtcccacttgtaaaaatgagtaataggtaaattattttttgtttaatgatgtaatgatagtgagacata 12705242  T
Q  104 tttaagtattttttattggagtcctta 130  Q
    |||||||| |||| |||||||||||||    
T  12705241 tttaagtacttttcattggagtcctta 12705215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 6597457 - 6597598
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||| | |||||| ||||||||||||| |||||  |  ||||||| |||| || |||||||||||| ||| |||| ||| ||||||||||||    
T  6597457 taataaataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtcatt 6597556  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaat 194  Q
    ||||||   ||||| ||||||||||||| |||||||||||||    
T  6597557 gagtccttaataagaatttttattaaaatattataaataaat 6597598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 46688848 - 46688711
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| |||||| ||||||||||||| ||||| |   |||||||||| |||| ||||||||| |||||| |||||||| |||||||||||||| ||     
T  46688848 ataaattatttttgtataatgatgtaaagttagtgggcc-tatttaagtacttttcattggagtcattattagtgtattgtcattggagtcattgaatca 46688750  T
Q  161 --cataagtatttttattaaaaaattataaataaatgat 197  Q
       |||  || ||||||||||||||||||||||||||||    
T  46688749 ttaatagatacttttattaaaaaattataaataaatgat 46688711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 22767176 - 22767302
Alignment:
Q  102 tatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatg 198  Q
    ||||||||||||||| |||||||||||||||| |||| |   ||||||  ||||||||||   ||||||| ||||||||||| ||||||||||||| |||    
T  22767176 tatttaagtatttttcattggagtccttattagtgtactcccattggaaccattgagtccttgataagtacttttattaaaatattataaataaataatg 22767275  T
Q  199 tgttccgtggggtccatttaaagagtc 225  Q
    |||  | | |||||||||||| |||||    
T  22767276 tgtaacatagggtccatttaatgagtc 22767302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 12705206 - 12705129
Alignment:
Q  170 ttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacctttgc 247  Q
    ||||||||||||||||||||||| ||||||||  ||||| |||||||||| |||||||| |||| ||| |||| ||||    
T  12705206 ttttattaaaaaattataaataagtgatgtgtcacgtggagtccatttaaggagtccttgttagggaaataccattgc 12705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 39092971 - 39093036
Alignment:
Q  92 tagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattga 157  Q
    ||||| || ||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||    
T  39092971 tagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtcattga 39093036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 13003947 - 13003794
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtg-----agatatatttaagtattttttattggagtccttattaatgtattgttattggag 150  Q
    ||||| |||||||| ||||||||||||||| |||  |||||     | | ||||||||||| ||||||||||||||||||||| |||| |   |||||||    
T  13003947 taataaataaattatttttgtttaatgatgcaaaattagtggagtgaaacatatttaagtactttttattggagtccttattagtgtactcccattggag 13003848  T
Q  151 tcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
     |||||| |||   ||| ||| ||||||||||| ||||||||||| ||| ||||    
T  13003847 ccattgaatccttaataggtacttttattaaaatattataaataagtgacgtgt 13003794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 50011476 - 50011410
Alignment:
Q  167 tatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttatta 232  Q
    |||||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||| |||||    
T  50011476 tatttttattaaaaaattataaataagtgatatgtacacgtggagtccatttaaagagtccctatta 50011410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 42762261 - 42762407
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtcctt----attaatgtattgttattggagt 151  Q
    ||||| |||||||| |||||| ||||||| ||||  ||||| ||  ||||||| ||||||| |||| ||||| |    |||||| |||||| ||| ||||    
T  42762261 taataaataaattacttttgtataatgatataaaattagtgtgacttatttaaatatttttcattgcagtccctgttaattaatatattgtcatttgagt 42762360  T
Q  152 cattgagtccataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||| ||  ||||||| ||| |||||||||||||||| ||||||    
T  42762361 cattgagtcc-ta--tatttttcttagaaaattataaataaataatgtgt 42762407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 38790669 - 38790605
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtc 126  Q
    |||||||| |||||| ||||||||||||| ||||||||  |||||||| |||||| |||||||||    
T  38790669 ataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 16255207 - 16255147
Alignment:
Q  144 attggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||| |||   ||| ||||||| ||||||||||||||||||||||||    
T  16255207 attggagtcattgagtccttaatatgtacttttatttaaaaattataaataaatgatgtgt 16255147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 28522909 - 28522845
Alignment:
Q  122 gagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaat 183  Q
    |||||||||||| |||||||| ||||||||||||||||||   ||| ||| ||||||||||||||    
T  28522909 gagtccttattagtgtattgtcattggagtcattgagtccttaatatgtacttttattaaaaaat 28522845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 2356249 - 2356326
Alignment:
Q  78 taatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    |||||||||||||  ||||  || | ||||| || ||||||||||||||   ||||||||||||||||||||||||||    
T  2356249 taatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtcatt 2356326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 37586548 - 37586495
Alignment:
Q  77 ttaatgatgtaaagatagtgagatatatttaagtattttttattggagtcctta 130  Q
    |||||||||||||| || |||||  ||||||||||||||| |||||||||||||    
T  37586548 ttaatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 50011697 - 50011641
Alignment:
Q  101 atatttaagtattttttattggagtccttattaatgtattgttattggagtcattga 157  Q
    |||||||| || |||| |||||||||||||||| |||||||| |||||||| |||||    
T  50011697 atatttaaatacttttgattggagtccttattattgtattgtcattggagttattga 50011641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 44343422 - 44343481
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtcctta 130  Q
    |||||| ||||| || |||| || ||||| |||||||||||||||| |||||||||||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtcctta 44343481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 10472436 - 10472374
Alignment:
Q  171 tttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttatta 232  Q
    ||||||||||||||||||||||||||| ||| | ||||   || |||||||||||||||||||    
T  10472436 tttattaaaaaattataaataaatgatatgtacacgtgaaatctatttaaagagtccttatta 10472374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 18898130 - 18898058
Alignment:
Q  170 ttttattaaaaaattataaataaatgatgtgt-tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||||||||||||||||||||| |||||| |  || ||||| |||||||||||| ||||||| | ||||||    
T  18898130 ttttattaaaaaattataaataaataatgtgtatatgt-gggtctatttaaagagtctttattagtgtactacc 18898058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 37586489 - 37586460
Alignment:
Q  167 tatttttattaaaaaattataaataaatga 196  Q
    ||||||||||||||||||||||||||||||    
T  37586489 tatttttattaaaaaattataaataaatga 37586460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 23655198 - 23655162
Alignment:
Q  163 taagtatttttattaaaaaattataaataaatgatgt 199  Q
    |||||| | ||||||||||||||||||||||||||||    
T  23655198 taagtactattattaaaaaattataaataaatgatgt 23655162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 12191466 - 12191708
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||| |||| ||||||||||| | ||||||| |||||||| |||||| || |||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  12191466 catataggagtaataaaatgtgtactacttggtcccacttgtaaaaaggaataatatgtaaattatttttgtttaatgatgtaaagatagtgagacatat 12191565  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc----cataagtatttttatt-aaaaaattataaataaatgatgt 199  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||     ||||||| ||||||| |||||||||||||||| |||| |    
T  12191566 ttaagtatttttcattggagtccttattagtgtattgtcattggagtcattgagtcttttaataagtacttttattaaaaaaattataaataagtgattt 12191665  T
Q  200 gttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||  |||||||||||||||| || |||||||||| ||||||||    
T  12191666 gtcacgtggggtccatttaaggattccttattagggaactacc 12191708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 51175468 - 51175708
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| || |||||||| | ||||||| || ||||| |||||| ||||||||  ||||||| ||| |||||||||||||||||||||| || ||||    
T  51175468 cataaaggagtactaaaatgtgtactacttggtcgcacttgtaaaaaggagtaataggtaaattattttcgtttaatgatgtaaagatagtgggacatat 51175567  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||   ||| ||| ||||||||||||||||||||||| ||||||||    
T  51175568 ttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtccttaataggtacttttattaaaaaattataaataagtgatgtgt 51175667  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||||||||||||||| |||||||| |||| ||||||||    
T  51175668 cacgtggggtccatttaaggagtccttgttagggaactacc 51175708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 44991914 - 44991729
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||||| |||||||| |||||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||    
T  44991914 cataaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatat 44991815  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattata 187  Q
    |||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||   ||| ||| ||||||||||||||||||    
T  44991814 ttaagtatttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttttattaaaaaattata 44991729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 38068451 - 38068686
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgaga----- 99  Q
    |||||| || ||||||||||| | ||||||| |||||||| |||||| ||||||||| ||||||| |||| ||||||||||||||||||||| ||         
T  38068451 cataaatgagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttctttaatgatgtaaagatagtgggacatat 38068550  T
Q  100 -tatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatg 195  Q
     |||||||||||| ||||  ||||||||||||||| |||||||| ||| ||||||||||||||   ||| ||| |||||||  ||||||||||||||  |    
T  38068551 ttatatttaagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttttatt--aaaattataaataagcg 38068648  T
Q  196 atgtgttccgtggggtccatttaaagagtccttattag 233  Q
    ||||||| |||||| |||||||||  ||||||| ||||    
T  38068649 atgtgtttcgtgggatccatttaagaagtccttgttag 38068686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 40445709 - 40445923
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||||| |||||||| |||||| ||||||||  ||||| | |||||||||||||||||||||||||| |  ||||    
T  40445709 cataaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaatcatttttgtttaatgatgtaaagatagtgggccatat 40445808  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||||||||  ||||||||||||||| ||||            |||||||||||   |||| || ||||||||||||||||||||| | ||||||||    
T  40445809 ttaagtatttttcgttggagtccttattagtgta------------tcattgagtccttaataaatacttttattaaaaaattataaattagtgatgtgt 40445896  T
Q  202 tccgtggggtccatttaaagagtcctt 228  Q
      |||||||||||||||||||||||||    
T  40445897 cacgtggggtccatttaaagagtcctt 40445923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 38068089 - 38068272
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| |||||||||||||||||||| ||||| |   |||||||||| ||||||||||||||||||||| |||| | | ||||||| |||||||||     
T  38068089 ataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggagccattgagtca 38068188  T
Q  161 --cataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||| ||||||||||||||| ||||||||||||||||||||  | |||||||||||||| |||||| |||||  ||||||||    
T  38068189 ttaatatgtatttttattaaaatattataaataaatgatgtgtaacatggggtccatttaaggagtccctattaaggaactacc 38068272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 13678713 - 13678530
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| ||||||||||||||| |||| ||||| |  ||||||||||| |||| ||| |||||||||||| |||||||| |||||||||||||||||     
T  13678713 ataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagtct 13678614  T
Q  161 --cataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||||||| ||||||||| | ||||||||||| ||| ||||  |||||||||||||||| |||||  |||||  ||||||||    
T  13678613 ttaataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctctattaaggaactacc 13678530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 31767963 - 31767749
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||||||  |||||||| |||||||||||||||  ||||||| ||||||||||| ||||||| |||||       ||||||||| ||    
T  31767963 taataaaatgtgtactacttagtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatcatgtaaatatagt-------atttaagtactt 31767871  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtccataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtcca 214  Q
    || |||||||||| ||||| |||||||| |||| |||| || |     || ||| ||||||||||||||||||||||| ||||||||  | ||| |||||    
T  31767870 ttcattggagtccatattagtgtattgtcattg-agtccttaa-----taggtacttttattaaaaaattataaataagtgatgtgtcacatggagtcca 31767777  T
Q  215 tttaaagagtccttattagagaactacc 242  Q
    |||||  |||||||||||||||||||||    
T  31767776 tttaagaagtccttattagagaactacc 31767749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 45832265 - 45832080
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||||||| |||||||| ||||||  |||||||  ||||||| ||||||||||||   ||||||||||   | |||||||||||  |    
T  45832265 taataaaatgtgtactacttggtcccacttttaaaaagcagtaataagtaaattatttttgtttaatg---taaagatagtagaacatatttaagtacct 45832169  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    || |||||||||||||||| |||||||  |||||||| ||||||| |   ||||||| ||||||| ||||||||||||||||||||||||    
T  45832168 ttcattggagtccttattagtgtattgccattggagtgattgagttcttaataagtacttttatt-aaaaattataaataaatgatgtgt 45832080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 38168227 - 38168066
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| |||||||||||||||||||  ||||| |   |||||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||     
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  161 --cataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaa 220  Q
       |||| || ||||||||||| ||||||||||| |||| |||   ||||||| ||||||||    
T  38168127 ttaataaatacttttattaaaatattataaataagtgatatgtaatgtggggttcatttaaa 38168066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 36904169 - 36904341
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| |||||     ||||||||||||||| | |||||||||||||| |||| |   ||||||| ||||    
T  36904169 taataaataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgtactcccattggagccatt 36904268  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtc 225  Q
    || |||   |||| || ||||||||||| ||||||||||||| ||||||  | |||||||||||||| |||||    
T  36904269 gaatccttgataaatacttttattaaaatattataaataaataatgtgtaacatggggtccatttaatgagtc 36904341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 5744894 - 5744711
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| ||||||||||| ||| |||| ||||| |  |||||||||||||||| ||| || ||||||||| |||||||  |||||||||||| ||| |    
T  5744894 ataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagttc 5744795  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||| ||| |||| |||| | ||||||||||| ||| ||||  |||||||||||||||| |||||| |||||  ||||||||    
T  5744794 ttaataggtactttttttaatagattataaataagtgacgtgtaacgtggggtccatttaaggagtccctattaaggaactacc 5744711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 17058897 - 17058764
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagt 167  Q
    |||||||||||||||||||||||||| |   |||||||||| |||| ||| |||||||||||| |||| |  |||||||||||||||||||   |||  |    
T  17058897 ttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaatagct 17058798  T
Q  168 atttttattaaaaaattataaataaatgatgtgt 201  Q
    | ||||||||||| ||||||||||| ||||||||    
T  17058797 acttttattaaaatattataaataagtgatgtgt 17058764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 27064550 - 27064449
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||| ||||||||  | ||||||||||||||| ||||| |||||||| ||| ||||||||    
T  27064550 taataaataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtcatt 27064451  T
Q  156 ga 157  Q
    ||    
T  27064450 ga 27064449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 27085654 - 27085553
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||| ||||||||  | ||||||||||||||| ||||| |||||||| ||| ||||||||    
T  27085654 taataaataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtcatt 27085555  T
Q  156 ga 157  Q
    ||    
T  27085554 ga 27085553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 32409462 - 32409583
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||| | ||||||||||| | ||||||  |||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||| || |  || |    
T  32409462 cataaagaagtaataaaatgtgtactacttagtcccacttgtaaaaatgagtaataggtaaattacttttgtttaatgatgtaaagataatgtgtcatgt 32409561  T
Q  105 ttaagtattttttattggagtc 126  Q
    ||||||| |||| |||||||||    
T  32409562 ttaagtacttttcattggagtc 32409583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 39720248 - 39720392
Alignment:
Q  101 atatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgat 197  Q
    ||||||||||| |||| ||||||||| |||||| |||||||| |||| ||||||||||| |   ||| ||| ||||||||||||||||||||||| |  |    
T  39720248 atatttaagtacttttaattggagtcattattagtgtattgtgattgaagtcattgagttcttaataggtacttttattaaaaaattataaataagtcgt 39720347  T
Q  198 gtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||   |||| |||||||||| ||||| ||||||  ||||||||    
T  39720348 gtgtcgtgtggagtccatttaaggagtcgttattaaggaactacc 39720392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 56397182 - 56397040
Alignment:
Q  61 tataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc 160  Q
    ||||||||| |||||| ||||||||||||| || ||| | |||||||||||||||| |||| ||||||||||   ||||||| |||||||||||| | ||    
T  56397182 tataaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtcattaaatc 56397083  T
Q  161 c---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |   ||| ||| ||| ||| ||||||||||||||| ||||||||    
T  56397082 cttaataggtactttcatt-aaaaattataaataagtgatgtgt 56397040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 4711591 - 4711727
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||||||||||||||||| |||||  | |||||||||    ||| |||||||||||||||||||||||   |||| ||| ||| | |||    
T  4711591 ataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tttcattggagtccttattaatgtattaccattgaagttattaaatcc 4711686  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgt 199  Q
       |||  || ||||||||||||||||||||||||||||||    
T  4711687 ttaatagatacttttattaaaaaattataaataaatgatgt 4711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 37450822 - 37450955
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtat----tttttattggagtccttattaatgtattgttattggagtcattga 157  Q
    |||||||| |||||  ||||||||||||  ||||| ||  |||||||||||    ||||||||| |||| | |||| | |||||| ||||||||||||||    
T  37450822 ataaattatttttgggtaatgatgtaaaattagtg-gacctatttaagtatattttttttattgaagtcatcattagtatattgtcattggagtcattga 37450920  T
Q  158 gtccataagtatttttattaaaaaattataaataa 192  Q
    |||| |||||| ||| |||||||||||||||||||    
T  37450921 gtccttaagtactttcattaaaaaattataaataa 37450955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 39719039 - 39719098
Alignment:
Q  37 tcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtg 96  Q
    |||||||| ||||||||| ||||| |||||||| ||||||||||| ||||||||||||||    
T  39719039 tcccacttgtaaaaatgaataatagataaattatttttgtttaataatgtaaagatagtg 39719098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 44991278 - 44991215
Alignment:
Q  179 aaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    |||||||||||||| ||||||||  |||||||||| ||||| ||||||||||||| ||||||||    
T  44991278 aaaattataaataagtgatgtgtcacgtggggtccgtttaaggagtccttattagggaactacc 44991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 30483008 - 30482930
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtatt 140  Q
    |||||||| |||||| ||||||||||||| || || ||  ||||||| |||||||||||||||||  ||||||||||||    
T  30483008 ataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtatt 30482930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 56228299 - 56228196
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||| | |||||   | ||||||| || |||| ||||||||||||||||||||| |   |||||||| |||    
T  56228299 taataaataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagtgatt 56228201  T
Q  156 gagtc 160  Q
    |||||    
T  56228200 gagtc 56228196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 13665856 - 13665785
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttatta 133  Q
    |||||||| ||||||||||||||| |||| ||||| |  ||||||||||| |||| ||| ||||||||||||    
T  13665856 ataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttatta 13665785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 19853989 - 19854071
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgta 138  Q
    ||||| |||||||| |||||||| ||||||||||| ||||| |   |||||||||| ||||||||  ||||||||||| ||||    
T  19853989 taataaataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 44516254 - 44516220
Alignment:
Q  167 tatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||||||||||    
T  44516254 tatttttattaaaaaattataaataaatgatgtgt 44516220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 51968095 - 51968066
Alignment:
Q  172 ttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||||||||||||||||||||||||||    
T  51968095 ttattaaaaaattataaataaatgatgtgt 51968066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 53096248 - 53096403
Alignment:
Q  92 tagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttatt-aaaaaattata 187  Q
    ||||| || ||||| |||||  ||| ||| ||||| |||||| ||||||||  || ||||||||||||||   ||| ||| ||| ||| |||||||||||    
T  53096248 tagtgggacatattcaagtacgtttaattcgagtctttattagtgtattgtcgttagagtcattgagtccttaatatgtaatttcattaaaaaaattata 53096347  T
Q  188 aataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||| |||||||| |  | || |||| ||||| ||||||||||||| | ||||||    
T  53096348 aataagtgatgtgtacatgcggagtccgtttaaggagtccttattagtgtactacc 53096403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 32409575 - 32409633
Alignment:
Q  144 attggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgt 199  Q
    |||||||||||||||||  |||   ||| ||||||||||||||||||||||| ||||||    
T  32409575 attggagtcattgagtctttaataggtacttttattaaaaaattataaataagtgatgt 32409633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 39629200 - 39629172
Alignment:
Q  173 tattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||||    
T  39629200 tattaaaaaattataaataaatgatgtgt 39629172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 2842504 - 2842730
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | |||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| |||||||| || ||||    
T  2842504 cataaaggagtaataaaatgtgtactacttgatcccacttgtaaaaataagtaatatgtaaattatttttgtttaatgatgtacagatagtgggacatat 2842603  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||   ||| ||| ||||||||||| ||||||||||| ||||||||    
T  2842604 ttaaatatttttcattggagtccttattagtgtattgtcattggagtcattgagtccttaatatgtacttttattaaaatattataaataagtgatgtgt 2842703  T
Q  202 tccgtggggtccatttaaagagtcctt 228  Q
      ||||||| ||||||||| |||||||    
T  2842704 cacgtggggcccatttaaaaagtcctt 2842730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 48557904 - 48558143
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||  ||||||| ||||||| |||||||||||||||||| ||| |||    
T  48557904 cataaaggagtaataaaatgtatactacttggtcccacttctaaaaatgagtaataggtaaattatttttgttcaatgatgtaaagatagtgcgat-tat 48558002  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| |||||| || ||||||||||||| | ||||||||||||||||||   |||| |||||||||||||||||||||||||  ||||||||    
T  48558003 ttaagtacttttcattggactcattattaatgtattctcattggagtcattgagtccttaataaatatttttattaaaaaattataaatatgtgatgtgt 48558102  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||||  |||||||||||||| ||  |||| ||||||||    
T  48558103 cacgtggattccatttaaagagtactggttagtgaactacc 48558143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 584012 - 584243
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||||||||||||||| | ||||||| || ||||| |||||| ||||| ||  ||||||| ||||||||||||||||||||||||||||| ||||    
T  584012 cataaaggaataataaaatgtgtactacttggtctcacttgtaaaaaagagtagtaggtaaattatttttgtttaatgatgtaaagatagtgagacatat 584111  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| ||||||||| || ||| |||||||  ||||||||||||||||||   |||  || ||||||||||||||||||||||| ||||||||    
T  584112 ttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtccttaatagatacttttattaaaaaattataaataagtgatgtgt 584211  T
Q  202 tccgtggggtccatttaaagagtccttattag 233  Q
      |||||||||||||||| |||||||| ||||    
T  584212 cacgtggggtccatttaaggagtccttgttag 584243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 44592042 - 44592259
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||||| || || || |||||||||||||||| ||||||| | ||||||||||||||||||||| || || ||||    
T  44592042 cataaaggagtaataaaatgtgtactacttggtcgcatttgtaaaaatgagtaatatgtaaattattgttgtttaatgatgtaaagataatgggacatat 44592141  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| ||| |||||||||||| |||||||||||||||||||| |||| |   ||| ||| |||||||||||| |||||||||| ||||||||    
T  44592142 ttaagtacttttcattagagtccttattagtgtattgttattggagtcatcgagttcttaataggtacttttattaaaaacttataaataagtgatgtgt 44592241  T
Q  202 tccgtggggtccatttaa 219  Q
      ||||||||||||||||    
T  44592242 cacgtggggtccatttaa 44592259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 8488801 - 8488621
Alignment:
Q  64 aaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc-- 161  Q
    |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||| |||      
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtcattgaatcctt 8488702  T
Q  162 -ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
     ||| ||| ||||||| ||||||||||||||| ||||||||  ||||  |||||||||||||||||||||||||||||||||    
T  8488701 aataggtacttttatt-aaaaattataaataagtgatgtgtcacgtgaagtccatttaaagagtccttattagagaactacc 8488621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 8515689 - 8515454
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| |  |||||| |||||||| |||||| ||||   |    ||||| ||||||||||||||||||||| |||| || ||||    
T  8515689 cataaaggagtaataaaatgtgtattacttggtcccacttgtaaaaaggagtggaa----aattatttttgtttaatgatgtaaagacagtgggacatat 8515594  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||| |||||||||||| |||||||  |||||||||||||| |||   ||| ||| ||||||| ||||||||||||||| ||||||||    
T  8515593 ttaagtattttttattcgagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt-aaaaattataaataagtgatgtgt 8515495  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      ||||||||||||||||  |||||||||||||||||||||    
T  8515494 cacgtggggtccatttaagaagtccttattagagaactacc 8515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 17503335 - 17503160
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||| |||| |||||||| || || ||  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  17503335 ataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatcc 17503236  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
       ||| ||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||    
T  17503235 ttaatatgtaatttcattaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattag 17503160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 17549879 - 17550054
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||| |||| |||||||| || || ||  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  17549879 ataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatcc 17549978  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
       ||| ||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||    
T  17549979 ttaatatgtaatttcattaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattag 17550054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 1837762 - 1837945
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| ||||||||||||||| |||| ||||| |  ||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||     
T  1837762 ataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagtct 1837861  T
Q  161 --cataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||||||| ||||||||| | ||||||||||| ||| ||||  |||||||||||||||| |||||  |||||  ||||||||    
T  1837862 ttaataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctctattaaggaactacc 1837945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 43786638 - 43786753
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||| ||| || ||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||    
T  43786638 taataaaatgtgtactatttggtctcacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtactt 43786737  T
Q  115 tttattggagtcctta 130  Q
    ||  ||||||||||||    
T  43786738 ttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 48767841 - 48768022
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| ||| |||| |||||| ||||||||||||| |||||||| ||||||||| | |||| |||||||||| | ||  ||||||   ||||||||||||    
T  48767841 taataaatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcatt 48767940  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
    ||||||   ||| | | ||| ||||||||||||||||||||||| |||| |  |||||||||||| ||||||||| ||||||    
T  48767941 gagtccttaataggaactttcattaaaaaattataaataaatgaggtgtacatgtggggtccattaaaagagtccctattag 48768022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 25173475 - 25173621
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||||||||  ||||||||  |||||||||| |||| ||| |||||  | ||| |||||||| |||||||  |||    
T  25173475 taataaataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggagatatt 25173574  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgt 199  Q
    ||||||   |||| ||||||||||||| |||||||||||||||||||    
T  25173575 gagtccttaataaatatttttattaaataattataaataaatgatgt 25173621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 43788592 - 43788694
Alignment:
Q  126 ccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaaga 222  Q
    |||||||| |||||||  |||||||||||||||||| |||   ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  43788592 ccttattagtgtattgccattggagtcattgagtccttaataggtacttttattaaaaaattataaataagtgatgtgtcccgtggggtccatttaagga 43788691  T
Q  223 gtc 225  Q
    |||    
T  43788692 gtc 43788694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 27399757 - 27399898
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||  ||||||||||||| |||||  |  ||||||| || |||| |||||||||  | ||| |||||||| ||||||||||||    
T  27399757 taataaataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtcatt 27399856  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaat 194  Q
    ||||||   ||||| |||||||||||||||||||||||||||    
T  27399857 gagtccttaataagaatttttattaaaaaattataaataaat 27399898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 19735635 - 19735820
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||| ||||||| ||||| ||||||||  |||||||||| ||||||||||| ||||||||||| | ||||||||| || |||| |||||    
T  19735635 ataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattccttattaatttcttgttattgaagacattaagtcc 19735734  T
Q  162 ---ataagtatttttatt--aaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||| ||| |||||||  ||||||| |||||||||| |||||| | ||| |||||||||||| |||||  |||||| | ||||||    
T  19735735 ttaatatgtacttttattaaaaaaaatcataaataaattatgtgtacacgt-gggtccatttaaggagtctctattagtggactacc 19735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 38974900 - 38974730
Alignment:
Q  64 aaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccat 163  Q
    |||||| |||||||||||||||||| | ||||| |   |||||||||| ||||  || |||||||||||| |||| | | |||||||||||||| ||| |    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtcattgaatcctt 38974802  T
Q  164 aag---tatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttatta 232  Q
    ||    || ||||||||||| ||||||||||| ||||||||  |||||||||||||||| |||||| |||||    
T  38974801 aatagatacttttattaaaatattataaataagtgatgtgtaacgtggggtccatttaaggagtccctatta 38974730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 8055401 - 8055220
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||| | ||||||||||||| ||||||||  |||||||  | |||||||   | ||||| ||| |||||||| ||||||||||||    
T  8055401 taataaataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtcatt 8055302  T
Q  156 gagtccataa---gtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
    ||| || |||   | ||||||||||||||||||||||||||||| |||| |   || | |||||| ||||||||||||||||    
T  8055301 gagcccttaataggaatttttattaaaaaattataaataaatgaggtgtacatatgagatccattaaaagagtccttattag 8055220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 8352662 - 8352748
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattga 157  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||| |||| ||||||||||| |||||||| |||| ||| |||||    
T  8352662 ttttttttaatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtattgtcattgaagttattga 8352748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 21294837 - 21294984
Alignment:
Q  57 aatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatg--tattgttattggagtcat 154  Q
    |||| |||||||| || ||||||||||||||||| ||||  || |||||||| ||||||| ||||||||| |||||| ||  ||||||  ||||||||||    
T  21294837 aataaataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtatattgtcgttggagtcat 21294936  T
Q  155 tgagtccataagtatt--tttattaaaaaattataaataaatgatgtgt 201  Q
    ||||| | |||  | |  |||||| ||||||||||||||||||||||||    
T  21294937 tgagttcttaataaatactttatt-aaaaattataaataaatgatgtgt 21294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 48294137 - 48293989
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| ||||| ||  ||||||  || |||  |||||||||||||||| |||| |   |||||||||| |    
T  48294137 taataaataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaat 48294038  T
Q  156 gagtc---cataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||    ||| ||| ||||||||||| ||||||||||| ||||||||    
T  48294037 gagtctttaatatgtacttttattaaaatattataaataagtgatgtgt 48293989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 19735926 - 19735864
Alignment:
Q  142 ttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||  |||   ||| ||||||||||||||||||||||||||||||||    
T  19735926 ttattggagtcattgagtctttaattagtacttttattaaaaaattataaataaatgatgtgt 19735864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1964291 - 1964227
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtc 126  Q
    |||||||| |||| | ||||||||||||| ||||| ||| ||||||| || ||||||||||||||    
T  1964291 ataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 31306035 - 31306127
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattgga 149  Q
    ||||| |||||||| |||||  ||||||||||||| || | ||| |||||||| || ||||||||  ||||| ||||||| |||||| ||||||    
T  31306035 taataaataaattacttttgaataatgatgtaaagttacttagacatatttaaata-tttttattaaagtccctattaatttattgtcattgga 31306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 8517063 - 8516833
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||| ||| ||| |||| ||||||  |||| || |||||||| ||||||||||||||||||||||||||  | ||||||||||||||    
T  8517063 taataaaatgtgtactatttggtcctacttgtaaaaagtagtagtagataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattt 8516964  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggt 211  Q
    ||||||||||| | | ||| |||||||| ||| ||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||  ||||| ||    
T  8516963 tttattggagttcatgttagtgtattgtcattagagtcattgagtccttaataagtacttttattaaaaaattataaataaatgatgtgtcacgtggagt 8516864  T
Q  212 ccatttaaagagtccttattagagaactacc 242  Q
    |||||||| |||||||| |||| ||||||||    
T  8516863 ccatttaaggagtccttgttagggaactacc 8516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 15958808 - 15958648
Alignment:
Q  83 atgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaa 179  Q
    |||||||||||||   | ||||||||||| |||| |||||||||||||||| |||||||| |||||||| ||||||||  |||   ||| ||||||||||    
T  15958808 atgtaaagatagttgaacatatttaagtacttttcattggagtccttattagtgtattgtcattggagttattgagtctttaataggtaattttattaaa 15958709  T
Q  180 aaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaacta 240  Q
    ||||||||||||||||||||||  |||| | ||||||||| |||||||||||| |||||||    
T  15958708 aaattataaataaatgatgtgtcacgtgtgatccatttaaggagtccttattaaagaacta 15958648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 31066429 - 31066280
Alignment:
Q  55 gtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcat 154  Q
    |||||| |||||||| |||||| ||||||||||||| ||||| || |||||||||||||||| |||||| ||| ||||| |||||||| ||| |||||||    
T  31066429 gtaataaataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtcat 31066330  T
Q  155 tgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    | |||||   |||  || ||||||||||||||||||||||||| ||||||    
T  31066329 taagtccttaatagatacttttattaaaaaattataaataaataatgtgt 31066280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 31046487 - 31046345
Alignment:
Q  55 gtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcat 154  Q
    |||||| |||||||| |||||| ||||||||||||| ||||  || ||||||||||||||||||||| | ||| ||||| ||||||||  || |||||||    
T  31046487 gtaataaataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcat 31046388  T
Q  155 tgagtcc---ataagtatttttattaaaaaattataaataaat 194  Q
    |||||||   |||  || |||||||||||||||||||||||||    
T  31046387 tgagtccttaatagatacttttattaaaaaattataaataaat 31046345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 565348 - 565541
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||| | ||||||| ||||  |||||  | ||||||||||| |||| | |||||||||||||| |||||||| |||||||| |||    
T  565348 taataaataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagttatt 565447  T
Q  156 gagtcc---ataagtatttttattaaaaaat---tataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||   ||||||| ||| ||||||||||   ||||||||| |||||||| | |  ||||||||||||| ||||||||||||| | ||||||    
T  565448 gagtccttaataagtactttcattaaaaaattactataaataagtgatgtgtacacacggggtccatttaaggagtccttattagcggactacc 565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 2553196 - 2553375
Alignment:
Q  64 aaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc-- 161  Q
    |||||| ||||| |||||||||||||| |||||| ||||||||||||| |||| | || | ||||||||| |||| |  ||||| | ||||||| |||      
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgtactcctattgaaatcattgaatcctt 2553295  T
Q  162 -ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaacta 240  Q
     ||||||||||||||||||| |||| |||||| ||||||||  |||   ||||||||||| | ||||||||| |||||||    
T  2553296 aataagtatttttattaaaatattagaaataagtgatgtgtaacgtaaagtccatttaaaaaatccttattaaagaacta 2553375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 12883279 - 12883133
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgta-ttgttattggagtcat 154  Q
    ||||| |||||||| ||||| |||||||| |||||  |||| | |||||||||||| |||| |||||||| ||||||| |||| || | |||||||||||    
T  12883279 taataaataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtcat 12883181  T
Q  155 tgagtc---cataagtatttttattaaaaaattataaataaatgatgt 199  Q
    ||||||    ||||||| ||||||||||| |||||| |||| ||||||    
T  12883180 tgagtcattaataagtacttttattaaaatattatagataagtgatgt 12883133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 42076025 - 42075953
Alignment:
Q  162 ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
    ||||||| ||||||||||||||||||||||||||| |||| | |||| ||||||||||| |||||||||||||    
T  42076025 ataagtacttttattaaaaaattataaataaatgacgtgtacacgtgaggtccatttaatgagtccttattag 42075953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 4396216 - 4396358
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||| | ||||||||||||| ||||| |   ||||||||||||||| |||  ||||||| ||| | || ||  ||||||||||||    
T  4396216 taataaataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtcatt 4396315  T
Q  156 gagtccataagtat---ttttattaaaaaattataaataaatga 196  Q
    || ||| ||| |||   ||||||||||| |||||||||||||||    
T  4396316 gaatccttaa-tataaattttattaaaatattataaataaatga 4396358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 30313061 - 30312956
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||  |  |||| ||||||| |||||||||  ||||| | ||||   |||||| |||||    
T  30313061 taataaataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattggaatcatt 30312962  T
Q  156 gagtcc 161  Q
    ||||||    
T  30312961 gagtcc 30312956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 30350481 - 30350411
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtc 126  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||  |  |||| ||||||| |||||||||    
T  30350481 taataaataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 15491113 - 15491038
Alignment:
Q  166 gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactac 241  Q
    |||||||||||  |||||||||||||| ||| ||||  ||||||||| |||||| || || || ||||||||||||    
T  15491113 gtatttttattttaaaattataaataagtgacgtgtcacgtggggtctatttaaggaatctttgttagagaactac 15491038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 1922957 - 1922924
Alignment:
Q  162 ataagtatttttattaaaaaattataaataaatg 195  Q
    ||||||| ||||||||||||||||||||||||||    
T  1922957 ataagtacttttattaaaaaattataaataaatg 1922924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 4740457 - 4740390
Alignment:
Q  137 tattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||| |||||||||||||||||| |||   || |||| | ||||||||||||||||| ||||||||    
T  4740457 tattgtcattggagtcattgagtccttaataggttttttaactaaaaaattataaataagtgatgtgt 4740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 55222353 - 55222540
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||||||| |||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||    
T  55222353 taataaaatgtgtactacttggtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaatt 55222452  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgt 199  Q
    || ||||||||  |||||| |||||||| ||||||||||||||||||   | ||||| |||||||||||||||||| |||| ||||||    
T  55222453 ttcattggagtatttattagtgtattgtcattggagtcattgagtccttaacaagtacttttattaaaaaattatagataagtgatgt 55222540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 1151692 - 1151503
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| ||||| |   |||||||||| ||||||||||||||||||||| |||| |  ||||||||| |||    
T  1151692 taataaataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtacttctattggagttatt 1151593  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||   ||||||| ||||||||||| ||||||||||| ||||||||  |||||||| ||||||| |||||  |||||  ||||||||    
T  1151592 gagtccttaataagtacttttattaaaatattataaataagtgatgtgtaacgtggggttcatttaaggagtctctattaaggaactacc 1151503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 5992339 - 5992110
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| |||||||||||| | || || ||| | |||||| ||||||||||||   ||||||||| |||| ||||||||||||||||||||| || ||||    
T  5992339 cataaaagaataataaaatatgttatatttggttccacttgtaaaaatgagta---tataaattatttttatttaatgatgtaaagatagtgggacatat 5992243  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
     |       ||| |||||||||||||||| |||||||| |||| |||||||||||||   |||| || ||||||||||||||||||||||| ||||||||    
T  5992242 ct-------tttcattggagtccttattagtgtattgtcattgaagtcattgagtccttaataaatacttttattaaaaaattataaataagtgatgtgt 5992150  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      ||| ||||||||||||||||| ||| |||| ||||||||    
T  5992149 cacgt-gggtccatttaaagagttcttgttagggaactacc 5992110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 1294572 - 1294711
Alignment:
Q  106 taagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgtt 202  Q
    |||||| |||| |||||||||||||||| |||||||| ||||||| |||||||||| |||   ||| ||||||||||||||||||||||| ||||||||     
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggagacattgagtccttaatatgtacttttattaaaaaattataaataagtgatgtgtc 1294671  T
Q  203 ccgtggggtccatttaaagagtccttattagagaactacc 242  Q
     |||||||||||||||| ||||||||||||  ||||||||    
T  1294672 acgtggggtccatttaaggagtccttattaaggaactacc 1294711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 31833952 - 31834141
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||| ||||||| |||| | ||||||||||||||    
T  31833952 taataaataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtcatt 31834051  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||   |||  || ||||||||||| |||| | |||| |||| | |  |||| | ||||||||| ||||| |||||| |||||||||    
T  31834052 gagtccttaatatatacttttattaaaatattacatataagtgatctctaacgtgagatccatttaaggagtctttattaaagaactacc 31834141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 19611134 - 19611289
Alignment:
Q  48 aaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattg 147  Q
    |||| ||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||| |||| |||| | | ||||||| |||||||| ||||    
T  19611134 aaaaggagtaataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattg 19611233  T
Q  148 gagtcattgagtcc---ataagtatttttatt-aaaaaattataaataaatgatgt 199  Q
    ||||||||||||||   ||| ||| ||||||| |||||||||||||||| ||||||    
T  19611234 gagtcattgagtccttaataggtacttttattaaaaaaattataaataagtgatgt 19611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 23059105 - 23059288
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc- 160  Q
    |||||||| ||||||||||||||| |||| ||||| |  ||||||||||| |||| ||| |||||||||||| || ||||  |||||||||||||||||     
T  23059105 ataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagtct 23059204  T
Q  161 --cataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||||||| ||||||||| | ||||||||||| ||| ||||  |||||||||||||||| ||||| ||||||  ||||||||    
T  23059205 ttaataagtacttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtctttattaaggaactacc 23059288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 3935888 - 3935767
Alignment:
Q  8 aaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatattta 107  Q
    |||||| ||||||||| | | ||| |||||| | |||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||    
T  3935888 aaaggagtaataaaatatgtactatttgatctcccttataaaaaggagtaatagataaattatttttgtttaatgatgtaaagataatgagacatattta 3935789  T
Q  108 agtattttttattggagtcctt 129  Q
    |||| |||| ||||||||||||    
T  3935788 agtacttttcattggagtcctt 3935767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 32552316 - 32552490
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagt 167  Q
    |||||||||||||||||||| || || ||  ||||||||||||||| |||||||||||||||| |||| | | ||||||||||||||||||   ||||||    
T  32552316 ttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtcattgagtccttaataagt 32552415  T
Q  168 atttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    |  |||||||||| ||||||||||| |||||| |   ||||| || ||||||||||||  |||||  ||||||||    
T  32552416 acctttattaaaatattataaataagtgatgtataatgtgggatctatttaaagagtctctattaaggaactacc 32552490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 25701646 - 25701479
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||| |||| |||||||| | ||||||  |||||||||| |||| |||| ||| ||||||| |||||||| ||||||||| |||| |||    
T  25701646 ataaattatttttgtataataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatcc 25701547  T
Q  162 ataa---gtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtc 225  Q
     |||   ||| ||| ||||||||||||||||||||||| |||| | |||| |||||||||||||||||    
T  25701546 ttaataggtactttcattaaaaaattataaataaatgacgtgtacacgtgaggtccatttaaagagtc 25701479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 48098387 - 48098488
Alignment:
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaa--ttataaataaatgatgt 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||   ||| |||||||||||||||||  |||||||||| ||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtcattgaatccttaatacgtatttttattaaaaaaagttataaataattgatgt 48098486  T
Q  200 gt 201  Q
    ||    
T  48098487 gt 48098488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 1559685 - 1559537
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||| | |||||| ||||||||||||| ||||||||  ||||||||||||||| ||| |||| ||||||| |||||||  |||||||| |||    
T  1559685 taataaataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagttatt 1559586  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||| |   |||  ||||||||||||| |||||||||||| ||||||||    
T  1559585 gagttcttaatagatatttttattaaacaattataaataagtgatgtgt 1559537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 47142758 - 47142851
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    |||||||| ||||||||| |||||||||| ||||||||  |||||||||| |||| |||||||||||||||| | | |||| ||||||||||||    
T  47142758 ataaattatttttgtttagtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggagtcatt 47142851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 38585978 - 38586071
Alignment:
Q  102 tatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataa 192  Q
    ||||||||||| ||| ||||||||| |||||| |||||||| ||||||||||||||||||   |||  || ||| |||||||||||||||||||    
T  38585978 tatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcattaaaaaattataaataa 38586071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 13778185 - 13778280
Alignment:
Q  65 aattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    ||||| |||| | ||||||||||| | |||||||| ||||||||| | |||| ||||||||| || |||||||||||| ||| ||||||||||||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtcattgagtcc 13778280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 30733027 - 30732963
Alignment:
Q  95 tgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagt 159  Q
    ||||| |||||||| || |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  30733027 tgagacatatttaactacttttaattggaatccttattaatgtattgtcattggagtcattgagt 30732963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 28131340 - 28131469
Alignment:
Q  76 tttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtc---cataagtatttt 172  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||| ||||||||| ||| ||||||   ||||||||||| | |||    |||  || |||    
T  28131340 tttaatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatacttt 28131439  T
Q  173 tatt-aaaaaattataaataaatgatgtgt 201  Q
    |||| |||||||||||||||| ||||||||    
T  28131440 tattaaaaaaattataaataagtgatgtgt 28131469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 35539859 - 35539780
Alignment:
Q  163 taagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    |||||| ||||||||||| ||||||||||| ||||||||  ||||||||||| |||| |||||| |||||  ||||||||    
T  35539859 taagtacttttattaaaatattataaataagtgatgtgtaacgtggggtccacttaaggagtccctattaaggaactacc 35539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 7325617 - 7325563
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttt 116  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||| |||||||    
T  7325617 ataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatattttt 7325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 7325546 - 7325507
Alignment:
Q  162 ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  7325546 ataaatatttttattaaaaaattataaataaatgatgtgt 7325507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 14903368 - 14903532
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| ||||||||||||||| |||| ||||| |  |||||||  || |||| ||| ||||| |||||| ||||||         ||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtatt---------gtcattgagtcc 14903458  T
Q  162 ataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttatta 232  Q
     |||   ||| ||||||||  | ||||||||||| ||| ||||  |||||||||||||||| |||||| |||||    
T  14903459 ttaacaggtacttttattagtatattataaataagtgacgtgtaacgtggggtccatttaaggagtccctatta 14903532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 1292034 - 1291971
Alignment:
Q  141 gttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||||||||||||| |||   |||| |||||||||||||| ||| ||||||| ||||||||    
T  1292034 gttattggagtcattgaatccttaataaatatttttattaaaatattttaaataagtgatgtgt 1291971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 37526835 - 37526766
Alignment:
Q  78 taatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattg 147  Q
    ||||||||||||| |||| | |||||||||||||||||| |||| ||||  ||||| | |||||| ||||    
T  37526835 taatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 46981833 - 46981922
Alignment:
Q  65 aattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcat 154  Q
    ||||| |||||| ||||||||||||| ||||||||  ||||||  || |||| | || ||  ||||||| |||||||| |||||||||||    
T  46981833 aattacttttgtataatgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggagtcat 46981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 35539707 - 35539735
Alignment:
Q  173 tattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||||    
T  35539707 tattaaaaaattataaataaatgatgtgt 35539735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 52393753 - 52393785
Alignment:
Q  167 tatttttattaaaaaattataaataaatgatgt 199  Q
    |||| ||||||||||||||||||||||||||||    
T  52393753 tattgttattaaaaaattataaataaatgatgt 52393785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 1581441 - 1581663
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||| | ||||||| |||||||| |||||||||||||||  ||||||| |||||||||||||||||||||||||| || ||||||||||| ||    
T  1581441 taataaaatgtgtactacttggtcccacttgtaaaaatgagtaataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtactt 1581540  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttat-taaaaaattataaataaatgatgtgttccgtgggg 210  Q
    || ||||||||||||||||||||||||| ||| |||||||| |||||   ||| || ||| |||  |||||||||||||||| ||||||||  ||||  |    
T  1581541 ttcattggagtccttattaatgtattgtcattcgagtcattaagtccttaataggtgtttctataaaaaaaattataaataagtgatgtgtcacgtgatg 1581640  T
Q  211 tccatttaaagagtccttattag 233  Q
    ||||||||| |||||||| ||||    
T  1581641 tccatttaaggagtccttgttag 1581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 14523318 - 14523119
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| |||||||||||| |   ||||||| |||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||  | ||||    
T  14523318 cataaaagaataataaaatatgcactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtggaacatat 14523219  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| | |||||||||||||| |||||||| |||| ||||||||||| |   |||| || ||||||||||||||||||||||||||||||||    
T  14523218 ttaagtacttttcagtggagtccttattagtgtattgtcattgaagtcattgagttcttaataactacttttattaaaaaattataaataaatgatgtgt 14523119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 12532475 - 12532285
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | |||||||||| ||| | |||||||||||||||  ||||||| |||||||||||||||||||||||||| || || |    
T  12532475 cataaaggagtaataaaatgtgtactacttgatcacacctgtaaaaatgagtaataagtaaattatttttgtttaatgatgtaaagatagtgggacatgt 12532376  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataa 192  Q
    ||||||| |||| ||| || || |||||| ||||||   ||||||||||||||||||   ||| ||||||||||||||| |||||||||||    
T  12532375 ttaagtacttttcattagaatctttattagtgtattaccattggagtcattgagtccttaataggtatttttattaaaatattataaataa 12532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 7177157 - 7176976
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||| ||||||| ||||| ||  |||||||||| |||| ||||||| |||||||| |||||||| ||||||||||||    
T  7177157 taataaataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcatt 7177058  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattag 233  Q
    ||||||   |||  || ||| |||||||||||||||||||||||||||| | |||||||||||| |||  ||||||||||||    
T  7177057 gagtccttaatagatactttcattaaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattag 7176976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 5423516 - 5423660
Alignment:
Q  101 atatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgat 197  Q
    ||||||||||| |||| |||| ||||||||||| |||||||| |||||||||||||||||  |||   ||| ||||||||||||||||||||||| ||||    
T  5423516 atatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcattgagtcattaatatgtacttttattaaaaaattataaataagtgat 5423615  T
Q  198 gtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    | ||  |||||||||||||||| ||||| || |||| ||||||||    
T  5423616 gcgtcacgtggggtccatttaaggagtctttgttagggaactacc 5423660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 22800672 - 22800479
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||||||||| ||||| ||  ||||||||||  ||| |||||||||| ||||| |||||||| ||||||||||||    
T  22800672 taataaataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtcatt 22800573  T
Q  156 gagtccata------agtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacc 242  Q
    |||||| ||      | | ||||||||||||||||||||||||||||||||| |  |||| |||||||||| |||| | |||||| | ||||||    
T  22800572 gagtccttaatagacattttttttattaaaaaattataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactacc 22800479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 43976586 - 43976707
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    |||||| || ||||||||||| | ||||||| |||||||| |||||| ||||||||  | ||||  |||||||||||||||||||||||||| |||||||    
T  43976586 cataaatgagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtcaattgtttttgtttaatgatgtaaagatagtgggatatat 43976685  T
Q  105 ttaagtattttttattggagtc 126  Q
    ||||||| |||| |||||||||    
T  43976686 ttaagtacttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 43976699 - 43976800
Alignment:
Q  144 attggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaacta 240  Q
    |||||||||||||||||| |||   ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||| |||| ||||||    
T  43976699 attggagtcattgagtccttaataggtacttttattaaaaaattataaataaatgatgtgtcacgtggggtccatttaagaagtccttgttagggaacta 43976798  T
Q  241 cc 242  Q
    ||    
T  43976799 cc 43976800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 12796029 - 12795889
Alignment:
Q  64 aaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc-- 161  Q
    |||||| |||||||||||||||||||| ||||| |   |||||||||| |||| ||||||||||||| || |||| |   |||| |||||||||||||      
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgtactaccattgaagtcattgagtcctt 12795930  T
Q  162 -ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
     |||  || ||||||||||||||||||||||||||||||||    
T  12795929 aatagatacttttattaaaaaattataaataaatgatgtgt 12795889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 13282124 - 13282273
Alignment:
Q  58 atatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtatttttt---attggagtccttattaatgtattgttattggagtcat 154  Q
    |||||||||||| |||||||||||||||||||| ||||| ||| ||||||| || |||||   || ||||| ||  ||| |||||||| ||| |||||||    
T  13282124 atatataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtcat 13282223  T
Q  155 tgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||| |||   ||| |||  |||||||||||||||| ||||||||||||||    
T  13282224 tgaatccttaatatgtacgtttattaaaaaattatgaataaatgatgtgt 13282273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 42374296 - 42374380
Alignment:
Q  144 attggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtc 225  Q
    |||||||||||||||||| |||   ||| ||||||||||| ||||||||||| ||||||||  |||| |||||||||||||||||    
T  42374296 attggagtcattgagtccttaataggtacttttattaaaacattataaataagtgatgtgtaacgtgtggtccatttaaagagtc 42374380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 11989813 - 11989712
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| ||||   ||||||||||||  |||||||| ||||||||| | |||| |||||||||| | ||| |||||||| ||||||||||||    
T  11989813 taataaataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtcatt 11989714  T
Q  156 ga 157  Q
    ||    
T  11989713 ga 11989712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 11767873 - 11767772
Alignment:
Q  103 atttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgt 199  Q
    ||||||| | |||| |||| ||||| | ||| |||||||| ||||| |||||||||| | |||   | ||||||||||||||| ||||||||||||| ||    
T  11767873 atttaagcacttttcattgaagtccctgttagtgtattgtcattggtgtcattgagtacttaatatgaatttttattaaaaaaatataaataaatgaggt 11767774  T
Q  200 gt 201  Q
    ||    
T  11767773 gt 11767772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 38230365 - 38230331
Alignment:
Q  167 tatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||||||||||||||||||||||| |||||||    
T  38230365 tatttttattaaaaaattataaataaaagatgtgt 38230331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 40214485 - 40214519
Alignment:
Q  167 tatttttattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||| ||||||    
T  40214485 tatttttattaaaaaattataaataaattatgtgt 40214519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42373924 - 42373972
Alignment:
Q  13 aataataaaatgtattctacttgatcccacttataaaaatgagtaatat 61  Q
    ||||||||||||| | ||| |||||||||||| |||||| |||||||||    
T  42373924 aataataaaatgtgtactatttgatcccacttgtaaaaaggagtaatat 42373972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 10624768 - 10624967
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||  ||||||| ||||||||||| |||||||||||||| |||||||    
T  10624768 cataaaggagtaataaaatgtgtactacttgctcccacttataaaaaggagtaataggtaaattatttttgtttaataatgtaaagatagtgggatatat 10624867  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||| |||| |||||||| ||||||| | |||| | |||||||| |||||||||    |||||| |||||||||||| |||||||||| ||||||||    
T  10624868 ttaagtacttttaattggagttcttattagtatattctcattggagttattgagtcctaagtaagtacttttattaaaaagttataaataagtgatgtgt 10624967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 28967737 - 28967527
Alignment:
Q  15 taataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattt 114  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||  | ||||||||||| ||    
T  28967737 taataaaatgtatactacttggtcccacttgtaaaaatgagtaatatgtaaattatttttgtttaatgatgtaaagataatggaacatatttaagtactt 28967638  T
Q  115 tttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtattt---ttattaaaaaattataaataaatgatgtgttccgtgg 208  Q
    || ||||||||| |||||| | |||||| |||||||||||||| |||   ||| ||||||   ||||||||| ||||||||||| ||||||||  ||| |    
T  28967637 ttcattggagtcattattactttattgtcattggagtcattgaatccttaataggtatttttattattaaaatattataaataagtgatgtgtcacgtag 28967538  T
Q  209 ggtccatttaa 219  Q
    |||| ||||||    
T  28967537 ggtctatttaa 28967527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 21848324 - 21848130
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||| ||||| ||||| ||  |||||||||| |||||||||||||| | |||| |||||| | ||||||||||||    
T  21848324 taataaataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtcatt 21848225  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacctttg 246  Q
    ||||||   ||||||||||||||||||||||||||||||| |||||||| | |||||| || |||||| |||  |||||||| | ||| ||||||    
T  21848224 gagtccttaataagtatttttattaaaaaattataaataagtgatgtgtacacgtgggatctatttaaggaggtcttattagtgtacttcctttg 21848130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 3703585 - 3703396
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||||||||||||||||| ||||| ||  ||| |||||| ||||||||| | ||||||||||||||||   |  |||||||||    
T  3703585 taataaataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatttccaccggagtcatt 3703486  T
Q  156 gagtcc---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||   ||| ||| ||||||||||| ||||||||||||||||||||   ||| |||||||||||||||| | ||||| |||||||||    
T  3703485 gagtccttaataggtacttttattaaaatattataaataaatgatgtgtaatgtgaggtccatttaaagagttcatattaaagaactacc 3703396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 12184677 - 12184902
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||| ||| | || |||||||||| || |||||| ||||||||  |||||||  ||||||||||||||||||||||||| || ||||    
T  12184677 cataaaggagtaataaattgtgtactgcttgatcccatttgtaaaaaagagtaataggtaaattatatttgtttaatgatgtaaagatagtgggacatat 12184776  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataagtatttttattaaaaaattataaataaatgatgtgttcc 204  Q
    ||||||| |||| |||| | |  |||||| |||||||| ||||||||||||||||||           |||||||||||||||||||| ||||||||  |    
T  12184777 ttaagtacttttcattgaaat-tttattagtgtattgtcattggagtcattgagtcc-----------tattaaaaaattataaataagtgatgtgtcac 12184864  T
Q  205 gtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||| |||||||||||  ||||||| |||| ||||||||    
T  12184865 gtgtggtccatttaagaagtccttgttagggaactacc 12184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 44059274 - 44059449
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgtta-ttggagtcattgagtcc---ataag 166  Q
    ||||| ||||||| |||||| ||||| ||| |||||||||| |||| |||||||||||||||| |||| |   | |||||||||||||||||   |||||    
T  44059274 ttttgattaatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgtactcccaattggagtcattgagtccttaataag 44059373  T
Q  167 tatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    || ||||||||||| ||||||||||||||||||||   ||||||||||||||| |||| ||| ||| |||||||||    
T  44059374 tacttttattaaaatattataaataaatgatgtgtaatgtggggtccatttaaggagttcttgttaaagaactacc 44059449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 14332489 - 14332256
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagtgagatatat 104  Q
    ||||||||| ||||||||||| | ||||||  |||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||| ||  | ||||    
T  14332489 cataaaggagtaataaaatgtgtactacttagtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatgatgtaaagatactggaacatat 14332390  T
Q  105 ttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||| |  ||| |||  ||||||| ||| ||||||| ||||| ||||||||| |||   ||| ||| ||||||||||       | |||| ||||||||    
T  14332389 ttaagcacatttcattatagtccttgttagtgtattgctattgaagtcattgaatccttaatatgtacttttattaaa-------atataagtgatgtgt 14332297  T
Q  202 tccgtggggtccatttaaagagtccttattagagaactacc 242  Q
      |||||||||||||||| |||||||| |||| ||||||||    
T  14332296 cacgtggggtccatttaaggagtccttgttagggaactacc 14332256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 12863671 - 12863506
Alignment:
Q  63 taaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc- 161  Q
    ||||||| |||||||||| ||| ||||| ||||| | | ||||||||||||||| ||||  ||||||||||| ||| |  |||||||||||||||||||     
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttattaaggtactactattggagtcattgagtcct 12863572  T
Q  162 --ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtc 225  Q
      ||| ||||||||||||||| ||||||||||| ||||||||  |||| ||| |||||||||||||    
T  12863571 taatatgtatttttattaaaatattataaataagtgatgtgtaacgtgtggttcatttaaagagtc 12863506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 27559035 - 27559218
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| ||||||||||| ||| |||| ||||| |  |||||||||||||||| ||| || |||||||||||||||||  |||||||||||| ||| |    
T  27559035 ataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtcattaagttc 27559134  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       ||| ||| |||| |||| | ||||||||||| ||| ||||  ||||||||| |||||| |||||| |||||  ||||||||    
T  27559135 ttaataggtactttttttaatagattataaataagtgacgtgtaacgtggggtctatttaaggagtccctattaaggaactacc 27559218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 37847691 - 37847864
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||||||| |||||||||  |||| |   ||||||||||||||| ||| |||||||||||| |||  |   ||||||||||||||||||    
T  37847691 ataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgttcttccattggagtcattgagtcc 37847790  T
Q  162 ataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttatta 232  Q
     |||   ||| ||||||||||| ||||||||||| |||||| |  |||||||| ||||||| |||||| |||||    
T  37847791 ttaatatgtacttttattaaaatattataaataagtgatgtctaacgtggggttcatttaaggagtccctatta 37847864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 39446361 - 39446462
Alignment:
Q  101 atatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagtatttttattaaaaaattataaataaatgat 197  Q
    ||||||||||| |||| |||||||||||||  | |||||||| ||||||||||||||||||   ||||||||||| ||||||||||||||||||| ||||    
T  39446361 atatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcattaaaaaattataaataagtgat 39446458  T
Q  198 gtgt 201  Q
    ||||    
T  39446459 gtgt 39446462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 2968945 - 2968803
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||||||||||||||||| |||||     |||||||||| ||||  ||||||||||||||| |||| |  |||||||| |||||||| |    
T  2968945 ataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgtactcctattggagccattgagttc 2968846  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
       ||||||| ||||||||||| ||||||||||| ||||||||    
T  2968845 ttaataagtacttttattaaaatattataaataagtgatgtgt 2968803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 36750935 - 36751055
Alignment:
Q  125 tccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaag 221  Q
    ||||||||| | |||||| |||||||||||| | ||  |||   ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |    
T  36750935 tccttattagtatattgtcattggagtcattaaatctttaataggtacttttattaaaaaattataaataagtgatgtgtcccgtggggtccatttaagg 36751034  T
Q  222 agtccttattagagaactacc 242  Q
    | ||||| |||| ||||||||    
T  36751035 attccttgttagggaactacc 36751055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 37456046 - 37456229
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| ||||||||||| ||| |||| ||||| |  |||||||||||||||| ||| || ||||||||| |||||||  |||||||||||| ||| |    
T  37456046 ataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagttc 37456145  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
       |||  || |||| |||| | ||||||||||| ||| ||||  |||||||||||||||| || ||| |||||  ||||||||    
T  37456146 ttaatagttactttttttaatagattataaataagtgacgtgtaacgtggggtccatttaaggaatccctattaaggaactacc 37456229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 42029671 - 42029540
Alignment:
Q  65 aattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccata 164  Q
    ||||| |||||||||||||||||||| ||||  ||| ||||||||||||||| |||| |||| |||||| |||||||| ||||||||| ||      |||    
T  42029671 aattatttttgtttaatgatgtaaagttagttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagtcctt-----aata 42029577  T
Q  165 agtatttttattaaaaaattataaataaatgatgtgt 201  Q
      | |||||||||||| ||||||||||| ||||||||    
T  42029576 tatgtttttattaaaatattataaataagtgatgtgt 42029540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 25749969 - 25749871
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||| |||| |||||||| ||||| || |||||||||||||||| | |||||| ||||||| |||||||  ||||||||||||||||||    
T  25749969 ataaattatttttgtataataatgtaaagttagtgggacatatttaagtatttttca-tggagttcttattagtgtattgccattggagtcattgagtcc 25749871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 12671782 - 12671930
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||| | |||||| |||| |||||||| ||||  ||   |||||| ||||||| |||||||||  ||||| |||||||| ||| ||||||||    
T  12671782 taataaataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtcatt 12671881  T
Q  156 gagtccataag---tatttttattaaaaaattataaataaatgatgtgt 201  Q
    || ||| |||    |||||||||||||||||| ||| ||||||||||||    
T  12671882 gaatccttaacaaatatttttattaaaaaattctaattaaatgatgtgt 12671930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 36749910 - 36749987
Alignment:
Q  5 cataaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatg 82  Q
    |||||| || ||||||||||| | || ||||  |||||||||||||| ||||||||| ||||||| ||||||||||||    
T  36749910 cataaacgagtaataaaatgtgtactgcttggccccacttataaaaaggagtaatatgtaaattatttttgtttaatg 36749987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 20680523 - 20680468
Alignment:
Q  79 aatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaa 134  Q
    |||||||||||| || ||||| |||| ||||||||||| ||||||||| |||||||    
T  20680523 aatgatgtaaagttaatgagacatatctaagtatttttcattggagtctttattaa 20680468  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 11916233 - 11916111
Alignment:
Q  102 tatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    ||||||||||||||| ||| ||||| |||||| |||||||  ||| ||||| |    |  ||| ||| ||| ||||||||||||||||||||| |||| |    
T  11916233 tatttaagtatttttaatttgagtctttattagtgtattgacattagagtcgtcc--ttaataggtactttcattaaaaaattataaataaataatgtat 11916136  T
Q  202 tc-cgtggggtccatttaaagagtc 225  Q
     | |||||||||||||||| |||||    
T  11916135 acacgtggggtccatttaaggagtc 11916111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 37347843 - 37347815
Alignment:
Q  173 tattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||||    
T  37347843 tattaaaaaattataaataaatgatgtgt 37347815  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 17096073 - 17095930
Alignment:
Q  102 tatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataa---gtatttttattaaaaaattataaataaatgatg 198  Q
    |||||||||| |||| |||| ||||||||||| |||||||| ||||||||||| || ||| |||   ||| ||||||||||||||||||||||| |||||    
T  17096073 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcatagaatccttaataggtacttttattaaaaaattataaataagtgatg 17095974  T
Q  199 tgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    |||  |||||||||||||||| |||||| ||||| | |||||||    
T  17095973 tgtcacgtggggtccatttaaggagtccctattaaaaaactacc 17095930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 29465388 - 29465247
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    ||||| ||||||||| ||||||||||||  ||||||||| |||||||| |||||| ||||||||| |||||| || ||||| ||| ||||||||||||||    
T  29465388 ataaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttttcattggagtcattattagtgaattgtcatttgagtcattgagtcc 29465289  T
Q  162 ataagtat----ttttattaaaaaattataaataaatgatgtg 200  Q
     ||| |||    ||| ||||||| |||||||||||||||||||    
T  29465288 ttaa-tataaactttcattaaaatattataaataaatgatgtg 29465247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 27753200 - 27753062
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| |||||||||||| ||||||| ||||| ||  |||||||||| |||| ||| |||||||||||| |||||||  ||| |||||||||| |||    
T  27753200 ataaattagttttgtttaatgttgtaaagttagtgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatcc 27753101  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgat 197  Q
       ||| ||| ||||||||||||||||||||||| ||||    
T  27753100 ttaataggtacttttattaaaaaattataaataagtgat 27753062  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 6812048 - 6812191
Alignment:
Q  56 taatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcatt 155  Q
    ||||| |||||||| |||||| ||||||||||||| |||||  |  |||||||||| |||| ||||||||| |||||| |||||||  ||||||||||||    
T  6812048 taataaataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtcatt 6812147  T
Q  156 gagtccata--agtatttttattaaaaaattataaataaatgat 197  Q
    |||| | ||  ||   ||| ||||||||||||||||||||||||    
T  6812148 gagttcttaatagatgtttaattaaaaaattataaataaatgat 6812191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 17096529 - 17096442
Alignment:
Q  8 aaaggaataataaaatgtattctacttgatcccacttataaaaatgagtaatatataaattaattttgtttaatgatgtaaagatagt 95  Q
    |||||| ||||||||||| | ||||||  |||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  17096529 aaaggagtaataaaatgtgtactacttagtcccacttgtaaaaaagagtaatagataaattatttttgtttaatgatgtaaagatagt 17096442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 5693795 - 5693934
Alignment:
Q  88 aagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtccataagtatttttattaaaaaattata 187  Q
    |||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||| |||| |||      ||| ||| ||| ||||||||||||||    
T  5693795 aagatagtgagatatatttaagtacttttaatttaagtccttattaatgtattgttatt-gagttatt-----aatatgtactttcattaaaaaattata 5693888  T
Q  188 aataaatgatgtgttc-cgtggggtccatttaaagagtccttatta 232  Q
    || ||||||| | | | ||||| |||||||||| ||||| ||||||    
T  5693889 aacaaatgatatctacacgtggagtccatttaaggagtctttatta 5693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 12919071 - 12919209
Alignment:
Q  62 ataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    |||||||| ||||||||||| | | |||| ||||| |  |||||||||||||||| ||| || ||||||||| |||||||  |||||||||||| |||||    
T  12919071 ataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtcattaagtcc 12919170  T
Q  162 ---ataagtatttttattaaaaaattataaataaatgat 197  Q
       ||| ||| |||| |||| | ||||||||||| ||||    
T  12919171 ttaataggtactttttttaatagattataaataagtgat 12919209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  63 taaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtc 126  Q
    ||||||| ||||||||||||||||||||||| || || ||||||||||| |||| |||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 31766515 - 31766425
Alignment:
Q  61 tataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtc 152  Q
    ||||||| | |||||| |||| |||||||| ||||| ||| |||||||||| | ||||||||||| ||||||| |||||||| ||| |||||    
T  31766515 tataaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttattggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 21447757 - 21447829
Alignment:
Q  170 ttttattaaaaaattataaataaatgatgtgttccgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||||| | ||||||||||| ||| ||||  |||||||||||||||| |||||| |||||  ||||||||    
T  21447757 ttttattaatatattataaataagtgacgtgtaacgtggggtccatttaaggagtccctattaaggaactacc 21447829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 10364307 - 10364380
Alignment:
Q  170 ttttattaaaaaattataaataaatgatgtgttc-cgtggggtccatttaaagagtccttattagagaactacc 242  Q
    ||||||||||| ||||||||||||||| |||| |  ||| |||||||| || |||||| |||||| ||||||||    
T  10364307 ttttattaaaacattataaataaatgaggtgtacatgtgaggtccattcaaggagtccctattagtgaactacc 10364380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 3863673 - 3863705
Alignment:
Q  162 ataagtatttttattaaaaaattataaataaat 194  Q
    |||| ||||||||||||||||||||||||||||    
T  3863673 ataaatatttttattaaaaaattataaataaat 3863705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 830 - 697
Alignment:
Q  71 ttttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc---ataagt 167  Q
    |||||||||||||||||||||||||| |   |||||||||| |||| ||| |||||||||||| |||| |  |||||||||||||||||||   |||  |    
T  830 ttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaatagct 731  T
Q  168 atttttattaaaaaattataaataaatgatgtgt 201  Q
    | ||||||||||| ||||||||||  ||||||||    
T  730 acttttattaaaatattataaatacgtgatgtgt 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 11576 - 11427
Alignment:
Q  54 agtaatatataaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtca 153  Q
    |||||||  ||||||| ||||||||||||||||||||||  || || ||||||||||| |||| ||| |||||||||||| | ||||   |||| |||||    
T  11576 agtaataggtaaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt-acattgaagtca 11478  T
Q  154 ttgagtc---cataagtatttttattaaaaaattataaataaatgatgtgt 201  Q
    || | ||    ||| ||| ||||||||||||||||||||||| ||||||||    
T  11477 ttaaatctttaataggtaattttattaaaaaattataaataagtgatgtgt 11427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 33317 - 33219
Alignment:
Q  63 taaattaattttgtttaatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtcattgagtcc 161  Q
    ||||||| |||| ||||||||||||||||||||||||  |||||||||| |||| |||| ||||||| | | |||| | |||||| ||||||| |||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgtactcttattgaagtcattaagtcc 33219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 13690 - 13764
Alignment:
Q  78 taatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtc 152  Q
    ||||||||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||| |||||||| |||||||||    
T  13690 taatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggagtc 13764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 21427 - 21501
Alignment:
Q  78 taatgatgtaaagatagtgagatatatttaagtattttttattggagtccttattaatgtattgttattggagtc 152  Q
    ||||||||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||| |||||||| |||||||||    
T  21427 taatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggagtc 21501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 59717 - 59745
Alignment:
Q  173 tattaaaaaattataaataaatgatgtgt 201  Q
    |||||||||||||||||||||||||||||    
T  59717 tattaaaaaattataaataaatgatgtgt 59745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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