View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_low_41 (Length: 255)

Name: NF10125_low_41
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_low_41
NF10125_low_41
[»] chr4 (1 HSPs)
chr4 (17-251)||(32945345-32945582)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 32945582 - 32945345
Alignment:
Q  17 catgtagatcagttattgtggtgaataatgacaagtgggattttgatgaaggagataaaaagttaaaaacaattgt----gatgtatacgatctgatatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    |||||||| |||||||||||    
T  32945582 catgtagatcagttattgtggtgaataatgacaagtgggattttgatgaaggagataaaaagttaaaa-caattgtatgtgatgtatatgatctgatatg 32945484  T
Q  113 atgctttctcatagccgtccattacttctttaaccgaacctctcgaaaatgttgtggcttacattacttgaagataactatgcattgaataatttcctaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32945483 atgctttctcatagccgtccattacttctttaaccgaacctctcgaaaatgttgtggcttacattactggaagataactatgcattgaataatttcctaa 32945384  T
Q  213 aacaaaactatgcatcgattagttctatctctgcttctc 251  Q
    |||||||||||||| ||||||||||||| |||| |||||    
T  32945383 aacaaaactatgcaccgattagttctatttctgattctc 32945345  T

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