View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_47 (Length: 250)
Name: NF10125_low_47
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_47 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 20548 - 20755
Alignment:
| Q |
27 |
aagttgtgttcttctattttaagttttctgtcatatat--cggtgaaagaaattgaccctattctcctataatcaatcttttcatgtatacattatcacc |
124 |
Q |
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| T |
20548 |
aagttgtgttcttctattttaagttttctgtcatatatatcggtgaaagaaattgaccctattctcctataatcaatcttttcatatat----tatcacc |
20643 |
T |
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| Q |
125 |
ccttcaaaaaatgtatacattatcacttttgtggttgtagtaacgtctaatgtagcaatcaaaacaagatatgaaatattattattgcaaattaacttat |
224 |
Q |
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| T |
20644 |
ccttcaaaa-atgtatacattatcacttttgtggttgtagtaacgtctaatgtagcaatcaaaacaagatatgaaatattattattgcaaattaacttat |
20742 |
T |
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| Q |
225 |
gtagtcactgtct |
237 |
Q |
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| T |
20743 |
gtagtcactgtct |
20755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 20500 - 20529
Alignment:
| Q |
7 |
aaaattttcacacattaactaagttgtgtt |
36 |
Q |
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| T |
20500 |
aaaattttcacacattaactaagttgtgtt |
20529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 41696602 - 41696457
Alignment:
| Q |
26 |
taagttgtgttcttctattttaagttttctgtcata--tatcggtgaaagaaattgaccctattctcctataatcaat-------cttttcatgtataca |
116 |
Q |
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| T |
41696602 |
taagctgtgttcttctgttctaagttttctgccacacatattggtgaaagaaataaaccctattctactataattaataattaatcttttcatgtatacg |
41696503 |
T |
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| Q |
117 |
ttatcaccccttcaaaaaatgtatacattatcacttttgtggttgt |
162 |
Q |
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| T |
41696502 |
ttatcatcccttcaaaaaatgtatacattatcacttttgtggttgt |
41696457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 37354624 - 37354693
Alignment:
| Q |
93 |
ataatcaatcttttcatgtatacattatcaccccttcaaaaaatgtatacattatcacttttgtggttgt |
162 |
Q |
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| T |
37354624 |
ataattaatcttttcatgtacacgttatcataccttcaaaaaatgtatacattatcacttttgtggttgt |
37354693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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