View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10125_low_52 (Length: 242)

Name: NF10125_low_52
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10125_low_52
NF10125_low_52
[»] chr8 (10 HSPs)
chr8 (19-117)||(11297922-11298020)
chr8 (19-117)||(22877806-22877904)
chr8 (19-117)||(36590303-36590401)
chr8 (21-112)||(22957478-22957569)
chr8 (19-117)||(16831686-16831784)
chr8 (21-117)||(10651194-10651289)
chr8 (19-115)||(40222967-40223063)
chr8 (19-88)||(24652434-24652503)
chr8 (28-117)||(40551984-40552072)
chr8 (83-117)||(32099751-32099785)
[»] chr3 (20 HSPs)
chr3 (19-117)||(2121995-2122093)
chr3 (22-117)||(41785984-41786079)
chr3 (19-117)||(42497162-42497259)
chr3 (19-117)||(48378387-48378485)
chr3 (19-117)||(41246410-41246510)
chr3 (21-117)||(35100344-35100439)
chr3 (21-117)||(46318652-46318748)
chr3 (21-117)||(52225459-52225555)
chr3 (19-117)||(42464005-42464104)
chr3 (19-117)||(47174530-47174631)
chr3 (19-117)||(51951415-51951513)
chr3 (21-117)||(39876777-39876874)
chr3 (21-117)||(30814143-30814239)
chr3 (16-114)||(32982805-32982906)
chr3 (19-117)||(27446595-27446689)
chr3 (21-117)||(45693271-45693368)
chr3 (52-115)||(2187222-2187285)
chr3 (21-104)||(2598758-2598841)
chr3 (75-117)||(40933960-40934002)
chr3 (21-72)||(51709181-51709232)
[»] chr1 (16 HSPs)
chr1 (19-117)||(7024987-7025085)
chr1 (21-117)||(49185051-49185147)
chr1 (19-117)||(37703841-37703939)
chr1 (21-117)||(36043166-36043262)
chr1 (21-117)||(51422850-51422946)
chr1 (19-113)||(37672220-37672314)
chr1 (19-117)||(42614001-42614099)
chr1 (19-115)||(30495069-30495166)
chr1 (21-117)||(12891697-12891793)
chr1 (19-115)||(40719638-40719733)
chr1 (19-117)||(15348995-15349093)
chr1 (19-117)||(36379012-36379110)
chr1 (21-117)||(6814200-6814296)
chr1 (19-117)||(46928847-46928948)
chr1 (19-115)||(28429187-28429286)
chr1 (21-106)||(10628714-10628798)
[»] chr6 (5 HSPs)
chr6 (21-117)||(29822903-29822999)
chr6 (19-117)||(33540607-33540705)
chr6 (19-117)||(5681687-5681785)
chr6 (41-117)||(33453923-33453999)
chr6 (21-70)||(29414852-29414901)
[»] chr2 (7 HSPs)
chr2 (19-117)||(8070498-8070596)
chr2 (19-117)||(2047199-2047297)
chr2 (19-117)||(26911676-26911774)
chr2 (19-117)||(7569918-7570018)
chr2 (36-117)||(6232158-6232240)
chr2 (19-117)||(9053009-9053106)
chr2 (21-104)||(2758991-2759074)
[»] chr4 (8 HSPs)
chr4 (19-112)||(35842496-35842589)
chr4 (19-117)||(43078078-43078176)
chr4 (21-115)||(44525796-44525889)
chr4 (19-117)||(36486266-36486365)
chr4 (21-99)||(23162768-23162847)
chr4 (68-117)||(53224419-53224468)
chr4 (21-104)||(31435165-31435248)
chr4 (19-76)||(30366069-30366126)
[»] chr7 (10 HSPs)
chr7 (19-117)||(44743885-44743983)
chr7 (19-116)||(48620625-48620722)
chr7 (19-117)||(38531071-38531170)
chr7 (19-117)||(38481441-38481539)
chr7 (19-117)||(12344954-12345054)
chr7 (19-115)||(49148500-49148597)
chr7 (26-117)||(9485889-9485981)
chr7 (21-117)||(39699002-39699099)
chr7 (19-117)||(28425507-28425598)
chr7 (21-106)||(45672457-45672541)
[»] chr5 (4 HSPs)
chr5 (19-117)||(36027861-36027961)
chr5 (19-112)||(4875811-4875904)
chr5 (19-117)||(6893260-6893356)
chr5 (19-115)||(4379425-4379522)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-90)||(64011-64082)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-106)||(32602-32686)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 11298020 - 11297922
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11298020 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 11297922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 22877904 - 22877806
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22877904 agttttacccttattattctaactaaatttcattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 22877806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 36590303 - 36590401
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36590303 agttttacccttattattctatctaaattgcattttttactcttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 36590401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 22957478 - 22957569
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatg 112  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22957478 ttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatg 22957569  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 16831686 - 16831784
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||| | ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16831686 agttttacccttattattctaaatgaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 16831784  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 10651194 - 10651289
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  10651194 ttttacccttattattctaactaaattctattttttacccttaatcatttattatattat-aattaaaatacatatgttttaaatatgaatgctatt 10651289  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 40223063 - 40222967
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40223063 agttttacccttatta-tctaacgaaattccatttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgcta 40222967  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 24652434 - 24652503
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaa 88  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  24652434 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaa 24652503  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 40551984 - 40552072
Alignment:
Q  28 cttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||| |||||||||||| || ||||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||| |||| ||||    
T  40551984 cttattattctaactaaatttca-tttttacccttaatcatttatcatattataaagtaaaagacatatgttttaaatatcaatgttatt 40552072  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 32099751 - 32099785
Alignment:
Q  83 attaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||||||||||||||||||||||    
T  32099751 attaaaatacatatgttttaaatatgaatgctatt 32099785  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 2121995 - 2122093
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2121995 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 2122093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 41785984 - 41786079
Alignment:
Q  22 tttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  41785984 tttacccttattattctaactaaattccattttttacccttaatcatttattatattatgaattaaaatacatatgttttaaatatgaatgctatt 41786079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 42497162 - 42497259
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42497162 agttttacccttattattctaactaaattcct-tttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 42497259  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 48378387 - 48378485
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||| ||||||| ||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48378387 agttttactcttattattctaactaaattctattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 48378485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 41246410 - 41246510
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt--actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctat 116  Q
    |||||||||||||||| ||||||||||||||| |||||  || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41246410 agttttacccttattattctaactaaattccattttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctat 41246509  T
Q  117 t 117  Q
    |    
T  41246510 t 41246510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 35100344 - 35100439
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  35100344 ttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaa-taaaatacatatgttttaaatatgaatgctatt 35100439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 46318748 - 46318652
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46318748 ttttacccttattattctaactaaatttcattttttacccttaatcacttattatattataaattaaaatacatatgttttaaatatgaatgctatt 46318652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 52225459 - 52225555
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  52225459 ttttacccttattattctaactagattccattttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 52225555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 42464104 - 42464005
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42464104 agttttacccttattattctaaataaattccatttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 42464005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 47174530 - 47174631
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt---actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| ||||||||||||||| |||||   || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47174530 agttttacccttattattctaactaaattccatttttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgcta 47174629  T
Q  116 tt 117  Q
    ||    
T  47174630 tt 47174631  T

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Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 51951415 - 51951513
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||| ||| ||||||||||||| | ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51951415 agttttacccttgttattctaactaaattctattttttatccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 51951513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 39876777 - 39876874
Alignment:
Q  21 ttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  39876777 ttttacccttattattctaactaaattccatttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaattctatt 39876874  T

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Target: chr3; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 30814239 - 30814143
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||| ||||||| ||||||||||||||| ||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  30814239 ttttactcttattattctaactaaattccattttttacccttaattatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 30814143  T

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Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 32982906 - 32982805
Alignment:
Q  16 tcaagttttacccttattactctaactaaattccacttttt---actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatg 112  Q
    |||| |||||||||||||| ||||||||||||||| |||||   || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  32982906 tcaaattttacccttattattctaactaaattccatttttttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatg 32982807  T
Q  113 ct 114  Q
    ||    
T  32982806 ct 32982805  T

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Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 27446595 - 27446689
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||    |||| ||||||||||||||||    
T  27446595 agttttacccttattattctaactaaattccattttttactcttaatcatttattatattataaagtaaaatac----gtttgaaatatgaatgctatt 27446689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 45693368 - 45693271
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttatta-tattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |  | ||||||||||||||||||||||| | ||||||||||||    
T  45693368 ttttacccttattattctaactaaattccattttttacacttaatcatttattattgctataaattaaaatacatatgttttagacatgaatgctatt 45693271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 2187285 - 2187222
Alignment:
Q  52 tttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    ||||||| ||| |||||||||| || | |||| |||||||||||||||||||||||||||||||    
T  2187285 tttttacccttcatcatttattgtaatataaagtaaaatacatatgttttaaatatgaatgcta 2187222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 2598758 - 2598841
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaa 104  Q
    |||||||||||||| | ||| ||||||||| ||||||| ||| |  |||||||||||| |||||||||||||||| | ||||||    
T  2598758 ttttacccttattagtttaattaaattccattttttaccctttaatatttattatattataaattaaaatacataaggtttaaa 2598841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 40934002 - 40933960
Alignment:
Q  75 tattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  40934002 tattataaattaaaatacatatgttttaaatatgaatgctatt 40933960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 51709181 - 51709232
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttat 72  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||| ||||||    
T  51709181 ttttacccttattattctaactaaattccattttttacccttaataatttat 51709232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 7024987 - 7025085
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7024987 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 7025085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 49185147 - 49185051
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49185147 ttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 49185051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 37703841 - 37703939
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  37703841 agttttacccttattattctaactaaattccattttttacctttaatcatttattatattataaattaaaatacatatgttttacatatgaatgctatt 37703939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 36043262 - 36043166
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  36043262 ttttacccttattattctaactaaattccattttttacccgtaatcatttattatattataaattaaaatacatatgttttaaatatgaatactatt 36043166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 51422946 - 51422850
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| |||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  51422946 ttttacccttattattctaactaaatttcattttttacccttaatcatttattatattataaattaaaatacatatattttaaatatgaatgctatt 51422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37672314 - 37672220
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgc 113  Q
    |||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  37672314 agttttacccttattattctaactaaattccattttttacctttaatcatttattatattataaattaaaatacatatgttttacatatgaatgc 37672220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 42614099 - 42614001
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||||| |||||| |||||||||||| || ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42614099 agttttacctttattattctaactaaatttcattttttagccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 42614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 30495166 - 30495069
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| |||| |||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30495166 agttttacccttattattctatctaaattccatttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgcta 30495069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 12891697 - 12891793
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||| ||||||| ||||||||||||||| ||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12891697 ttttacgcttattagtctaactaaattccattttttacccttaataatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 12891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 40719638 - 40719733
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  40719638 agttttacccttattattctaactaaattccattttttagccttaatcatttattata-tataaattaaaatacatatgttttaaatatgaatgcta 40719733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 15348995 - 15349093
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||| |||||||| |  ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  15348995 agttttacccttattattcttactaaatttcgttttttacccttaatcatttattatattataaattaaaacacatatgttttaaatatgaatgctatt 15349093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 36379110 - 36379012
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||  |||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36379110 agttttacccttattattctaactaaattccattttttacccttaactatttgttatattataaattaaaatacatatgttttaaatatgaatgttatt 36379012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 6814200 - 6814296
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| |||| || |||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||    
T  6814200 ttttacccttattagtctaactaaattccatttttaacccttaatcatttattgtattataaagtaaaatgcatatgttttaaatatgaatgctatt 6814296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 46928948 - 46928847
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt---actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| |||||||||||| || |||||   || ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  46928948 agttttacccttattattctaactaaatttcatttttttttacccttaatcatttattatattataaagtaaaacacatatgttttaaatatgaatgcta 46928849  T
Q  116 tt 117  Q
    ||    
T  46928848 tt 46928847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 28429187 - 28429286
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattt---taaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| ||||| ||||||||| ||||||| |||||| |||||||||| |    |||| |||||||||||||||||||||||||||||||    
T  28429187 agttttacccttattattctaaataaattccattttttacccttaataatttattataataatataaagtaaaatacatatgttttaaatatgaatgcta 28429286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 10628798 - 10628714
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaata 106  Q
    ||||||| |||||| |||||||||||| |  ||| ||| ||| || |||||||||||| |||||| ||||||||||||||||||||    
T  10628798 ttttacctttattagtctaactaaatttccttttctaccctttataatttattatattataaatt-aaatacatatgttttaaata 10628714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 29822999 - 29822903
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29822999 ttttacccttattattctaactaaattccattttttactcttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 29822903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 33540705 - 33540607
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| |||||||||||| || ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33540705 agttttacccttattattctaactaaatttcattttttacccttaattatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 33540607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 5681687 - 5681785
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| |||||||||||| || |||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  5681687 agttttacccttattattctaactaaatttcattttttacctttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 5681785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 33453923 - 33453999
Alignment:
Q  41 ctaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||| | ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  33453923 ctaaattctaatttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 33453999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29414901 - 29414852
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcattt 70  Q
    |||||||||||||| ||||||||||||| | || |||| |||||||||||    
T  29414901 ttttacccttattattctaactaaattctatttcttacccttaatcattt 29414852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 8070596 - 8070498
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8070596 agttttacccttattattctaactaaattccattttttacccttaatcgtttattatattataaattaaaatacatatgttttaaatatgaatgctatt 8070498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 2047297 - 2047199
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  2047297 agttttacccttattattctaactaaattccattttttactcttaattatttattatattataaattaaaatacatatattttatatatgaatgctatt 2047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 26911676 - 26911774
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  26911676 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaataaaaatacatatgttttaaatatgaatgttatt 26911774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 7569918 - 7570018
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatat--tttaaattaaaatacatatgttttaaatatgaatgctat 116  Q
    |||||||||||||||| | ||||||||||||| |||| || ||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||||    
T  7569918 agttttacccttattattttaactaaattccatttttaacccttaatcatttattatattatataaattaaaatacatatgttttcaatatgaatgctat 7570017  T
Q  117 t 117  Q
    |    
T  7570018 t 7570018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 6232240 - 6232158
Alignment:
Q  36 tctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6232240 tctaactaaatttcagttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 6232158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9053106 - 9053009
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||| ||||||| ||||||||||||||| ||||| || ||||||||||||||||||| |||| ||||||||  | |||||||||||||||||||||    
T  9053106 agttttactcttattattctaactaaattccatttttttacccttaatcatttattatattataaagtaaaatac--acgttttaaatatgaatgctatt 9053009  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 2758991 - 2759074
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaa 104  Q
    |||||||||||||| | ||||||||||||| |||| ||  || | |||| |||||||| |||||||||||||||||| ||||||    
T  2758991 ttttacccttattagtttaactaaattccatttttcaccttttagcattcattatattataaattaaaatacatatggtttaaa 2759074  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 35842589 - 35842496
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatg 112  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35842589 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatg 35842496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 43078176 - 43078078
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| | ||||||||||||| |||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  43078176 agttttacccttattagtttaactaaattccatttttcacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 43078078  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 44525796 - 44525889
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  44525796 ttttacccttattattctaactaaattcta-tttttactcttaatcatttattataatataaagtaaaatacatatgttttaaatatgaatgcta 44525889  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 36486365 - 36486266
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||| |||||||| ||||| ||||||| | ||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36486365 agttttatccttattattctaattaaattctatttttttacccttaattatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 36486266  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 23162768 - 23162847
Alignment:
Q  21 ttttacccttattactctaactaaattccacttttt--actcttaatcatttattatattttaaattaaaatacatatgtt 99  Q
    |||||||||||||| ||||||||||||||| |||||  || |||| |||||||||||||| ||||||||||||||||||||    
T  23162768 ttttacccttattattctaactaaattccattttttttaccctta-tcatttattatattataaattaaaatacatatgtt 23162847  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 53224419 - 53224468
Alignment:
Q  68 tttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53224419 tttattatattataaattaaaatacatatgttttaaatatgaatgctatt 53224468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 31435165 - 31435248
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaa 104  Q
    ||||||| |||||| | ||| ||||||||| ||||||| ||| | |||  |||||||| |||||||||||||||||| ||||||    
T  31435165 ttttacctttattagtttaattaaattccattttttaccctttaacatacattatattataaattaaaatacatatggtttaaa 31435248  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 30366126 - 30366069
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattata 76  Q
    |||||||| ||||||| ||||||||||||||| ||||||| ||| || ||||||||||    
T  30366126 agttttacacttattattctaactaaattccattttttaccctttataatttattata 30366069  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 44743885 - 44743983
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  44743885 agttttacctttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaatacatatgctttaaatatgaatgctatt 44743983  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 48620625 - 48620722
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctat 116  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48620625 agttttacccttattattctaactaaatttcattttttacccttaaacatttattatattataaattaaaatacatatgttttaaatatgaatgctat 48620722  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 38531170 - 38531071
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  38531170 agttttacccttattattctaactaaattccatttttttacccttaatcatttattatattataaattaaattacatatgttttaaatatgaatgctatt 38531071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 38481441 - 38481539
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||| |||||||| |||||||||||| || ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  38481441 agttttatccttattattctaactaaatttcattttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgctatt 38481539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 12345054 - 12344954
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt--actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctat 116  Q
    |||||||||||||||| ||||||||||||||| |||||  || ||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||    
T  12345054 agttttacccttattaatctaactaaattccattttttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatgttat 12344955  T
Q  117 t 117  Q
    |    
T  12344954 t 12344954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 49148500 - 49148597
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| | ||||||||||||| ||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49148500 agttttacccttattattttaactaaattccatttttttacccttaataatttattatattataaattaaaatacatatgttttaaatatgaatgcta 49148597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 9485889 - 9485981
Alignment:
Q  26 cccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||||| |||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9485889 cccttattattctaactaaatttcatttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctatt 9485981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 39699002 - 39699099
Alignment:
Q  21 ttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||| ||||||||||||  | ||||| || ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||    
T  39699002 ttttacccttattattctaactaaattttatttttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatacgaatgctatt 39699099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 28425598 - 28425507
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    ||||||| || ||||| |||||||||||| || ||||||| ||||||||||||||||||| |||| |||       |||||||||||||||||||||||    
T  28425598 agttttagccatattattctaactaaatttcattttttacccttaatcatttattatattataaagtaa-------atgttttaaatatgaatgctatt 28425507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 45672457 - 45672541
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaata 106  Q
    |||||||| ||||  ||||||||||||||| |||| || ||| |||||||||| |||| |||| |||||||||| |||||||||||    
T  45672457 ttttacccatattggtctaactaaattcca-ttttcaccctttatcatttattgtattataaaataaaatacatgtgttttaaata 45672541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 36027961 - 36027861
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt--actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctat 116  Q
    |||||||||||||||| ||||||||||||||| |||||  || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36027961 agttttacccttattattctaactaaattccattttttttacccttaatcatttattatattataaattaaaatacatatgttttaaatatgaatgctat 36027862  T
Q  117 t 117  Q
    |    
T  36027861 t 36027861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 4875811 - 4875904
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatg 112  Q
    |||||||||||||||| ||||||||||||  | ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4875811 agttttacccttattattctaactaaattttattttttacccttaatcatttattatattataaagtaaaatacatatgttttaaatatgaatg 4875904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 6893356 - 6893260
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgctatt 117  Q
    |||||||||||||||| |||| ||||||| || ||||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  6893356 agttttacccttattattctagctaaatttcattttttacccttaatcat--attatattataaattaaaatacatatgttttaaatatgaatgctatt 6893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 4379425 - 4379522
Alignment:
Q  19 agttttacccttattactctaactaaattccacttttt-actcttaatcatttattatattttaaattaaaatacatatgttttaaatatgaatgcta 115  Q
    |||||||||||||||| |||||||||||| || ||||| || ||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||    
T  4379425 agttttacccttattattctaactaaatttcatttttttacccttaatcatttattataatataaagtaaagtacatatgttttaaatatgaatgcta 4379522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 64011 - 64082
Alignment:
Q  19 agttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaat 90  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  64011 agttttacccttattattctaactaaattccattttttacccttaatcatttattatattataaattaaaat 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 32602 - 32686
Alignment:
Q  21 ttttacccttattactctaactaaattccactttttactcttaatcatttattatattttaaattaaaatacatatgttttaaata 106  Q
    |||||||||||||| ||||||||||||||| |||| || ||| |||||||| |||||| |||| |||||||  |||||||||||||    
T  32602 ttttacccttattagtctaactaaattcca-ttttcaccctttatcatttactatattataaagtaaaataagtatgttttaaata 32686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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