View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10125_low_54 (Length: 239)
Name: NF10125_low_54
Description: NF10125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10125_low_54 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 4372 - 4202
Alignment:
| Q |
52 |
atactcatatttttgatttgattgtggatgatcaattgcaattgtcgaacgttttttgaatgttaggtagagtgttgtaggtaaaagcttaattattgca |
151 |
Q |
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| T |
4372 |
atactcatatttttgatttgattgtggatgatcaattgcaattgtctaacgttttt-gaatgttaggtagagtgttgtaggtaaaagcttaattattgca |
4274 |
T |
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| Q |
152 |
ctatatataggcaacttttgtttgtagattcataagagtttgtggaaattgtgtttcatagattttggtatt |
223 |
Q |
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| T |
4273 |
ctatatataggcaacttttgtttgtagattcataagagtttgtggaaattgtgtttcatagattttggtatt |
4202 |
T |
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Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 6615086 - 6614916
Alignment:
| Q |
52 |
atactcatatttttgatttgattgtggatgatcaattgcaattgtcgaacgttttttgaatgttaggtagagtgttgtaggtaaaagcttaattattgca |
151 |
Q |
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| T |
6615086 |
atactcatatttttgatttgattgtggatgatcaattgcaattgtctaacgttttt-gaatgttaggtagagtgttgtaggtaaaagcttaattattgca |
6614988 |
T |
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| Q |
152 |
ctatatataggcaacttttgtttgtagattcataagagtttgtggaaattgtgtttcatagattttggtatt |
223 |
Q |
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| T |
6614987 |
ctatatataggcaacttttgtttgtagattcataagagtttgtggaaattgtgtttcatagattttggtatt |
6614916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 19059558 - 19059722
Alignment:
| Q |
1 |
cttttcatatcttttaaccattctatatctttagaaggannnnnnnggggaatactcatattttt-gatttgattgtggatgatcaattgcaattgtcga |
99 |
Q |
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| T |
19059558 |
cttttcatatcttttaaccattctatatctttagaaggatttttttggggaatactcattttttttgatttgattgtggatgatcaattgcaattttcta |
19059657 |
T |
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| Q |
100 |
acgttttttgaatgttaggtagagtgttgtaggtaaaagcttaattattgcactatatataggcaa |
165 |
Q |
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| T |
19059658 |
acgtttt-tgaatgttaggtagagtgttgtaggtaaaagcttaattattccactatatataggcaa |
19059722 |
T |
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